IMPORTANT WARNING: Sequences R_com1_GQ8 and R_vir2_GQ8 are exactly identical IMPORTANT WARNING Found 1 sequence that is exactly identical to other sequences in the alignment. Normally they should be excluded from the analysis. A mixed model file with model assignments for undetermined columns removed has already been printed to file /Users/usuario/Desktop/raxmlGUI.app/Contents/Resources/Scripts/raxmlgui/part.txt.reduced An alignment file with sequence duplicates removed has already been printed to file /Users/usuario/Desktop/raxmlGUI.app/Contents/Resources/Scripts/raxmlgui/combi.phy.reduced This is RAxML version 7.2.8 released by Alexandros Stamatakis in October 2010. With greatly appreciated code contributions by: Andre Aberer (TUM) Simon Berger (TUM) John Cazes (TACC) Michael Ott (TUM) Nick Pattengale (UNM) Wayne Pfeiffer (SDSC) Akifumi S. Tanabe (Univ. Tsukuba) Alignment has 135 distinct alignment patterns Proportion of gaps and completely undetermined characters in this alignment: 0.80% RAxML rapid bootstrapping and subsequent ML search Using 4 distinct models/data partitions with joint branch length optimization Executing 1000 rapid bootstrap inferences and thereafter a thorough ML search All free model parameters will be estimated by RAxML GAMMA model of rate heteorgeneity, ML estimate of alpha-parameter GAMMA Model parameters will be estimated up to an accuracy of 0.1000000000 Log Likelihood units Partition: 0 Alignment Patterns: 52 Name: part_1 DataType: DNA Substitution Matrix: GTR Partition: 1 Alignment Patterns: 5 Name: part_2 DataType: DNA Substitution Matrix: GTR Partition: 2 Alignment Patterns: 32 Name: part_3 DataType: DNA Substitution Matrix: GTR Partition: 3 Alignment Patterns: 46 Name: part_4 DataType: DNA Substitution Matrix: GTR RAxML was called as follows: ./raxmlHPC-728 -T 2 -f a -x 900 -m GTRGAMMA -p 866 -N 1000 -o O_dre_DQ98,O_lin_FJ21,R_alb_DQ98,R_luteola -s /Users/usuario/Desktop/raxmlGUI.app/Contents/Resources/Scripts/raxmlgui/combi.phy -n Glacuoreseda_ITS_LF.tre -q /Users/usuario/Desktop/raxmlGUI.app/Contents/Resources/Scripts/raxmlgui/part.txt -w /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/ Testing which likelihood implementation to use Standard Implementation full tree traversal time: 0.002142 Subtree Equality Vectors for gap columns full tree traversal time: 0.002454 ... using standard implementation Time for BS model parameter optimization 0.086333 Bootstrap[0]: Time 0.297604 seconds, bootstrap likelihood -2612.658615, best rearrangement setting 8 Bootstrap[1]: Time 0.228380 seconds, bootstrap likelihood -2748.664694, best rearrangement setting 11 Bootstrap[2]: Time 0.204202 seconds, bootstrap likelihood -2765.204207, best rearrangement setting 7 Bootstrap[3]: Time 0.101105 seconds, bootstrap likelihood -2689.215388, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[4]: Time 0.185994 seconds, bootstrap likelihood -2697.087386, best rearrangement setting 14 Bootstrap[5]: Time 0.213783 seconds, bootstrap likelihood -2674.515244, best rearrangement setting 15 Bootstrap[6]: Time 0.091935 seconds, bootstrap likelihood -2682.261224, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[7]: Time 0.374892 seconds, bootstrap likelihood -2647.158300, best rearrangement setting 10 Bootstrap[8]: Time 0.182180 seconds, bootstrap likelihood -2615.134989, best rearrangement setting 14 Bootstrap[9]: Time 0.213593 seconds, bootstrap likelihood -2617.655379, best rearrangement setting 12 Bootstrap[10]: Time 0.109738 seconds, bootstrap likelihood -2678.137003, best rearrangement setting 8 Bootstrap[11]: Time 0.107220 seconds, bootstrap likelihood -2636.647254, best rearrangement setting 8 Bootstrap[12]: Time 0.094543 seconds, bootstrap likelihood -2506.036940, best rearrangement setting 6 Bootstrap[13]: Time 0.226565 seconds, bootstrap likelihood -2680.577176, best rearrangement setting 11 Bootstrap[14]: Time 0.234441 seconds, bootstrap likelihood -2768.017122, best rearrangement setting 10 Bootstrap[15]: Time 0.238217 seconds, bootstrap likelihood -2684.498544, best rearrangement setting 10 Bootstrap[16]: Time 0.205521 seconds, bootstrap likelihood -2657.651847, best rearrangement setting 14 Bootstrap[17]: Time 0.231959 seconds, bootstrap likelihood -2752.195722, best rearrangement setting 12 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[18]: Time 0.248346 seconds, bootstrap likelihood -2673.807150, best rearrangement setting 12 Bootstrap[19]: Time 0.230017 seconds, bootstrap likelihood -2773.877339, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[20]: Time 0.164727 seconds, bootstrap likelihood -2692.597782, best rearrangement setting 15 Bootstrap[21]: Time 0.257299 seconds, bootstrap likelihood -2658.184951, best rearrangement setting 11 Bootstrap[22]: Time 0.204350 seconds, bootstrap likelihood -2776.279319, best rearrangement setting 7 Bootstrap[23]: Time 0.101528 seconds, bootstrap likelihood -2670.228583, best rearrangement setting 10 Bootstrap[24]: Time 0.096479 seconds, bootstrap likelihood -2522.763315, best rearrangement setting 12 Bootstrap[25]: Time 0.256971 seconds, bootstrap likelihood -2761.649307, best rearrangement setting 11 Bootstrap[26]: Time 0.129103 seconds, bootstrap likelihood -2627.648417, best rearrangement setting 9 Bootstrap[27]: Time 0.179434 seconds, bootstrap likelihood -2657.372665, best rearrangement setting 9 Bootstrap[28]: Time 0.094895 seconds, bootstrap likelihood -2623.249760, best rearrangement setting 14 Bootstrap[29]: Time 0.145858 seconds, bootstrap likelihood -2674.785497, best rearrangement setting 11 Bootstrap[30]: Time 0.209568 seconds, bootstrap likelihood -2679.903470, best rearrangement setting 14 Bootstrap[31]: Time 0.213367 seconds, bootstrap likelihood -2703.468285, best rearrangement setting 11 Bootstrap[32]: Time 0.250818 seconds, bootstrap likelihood -2680.486113, best rearrangement setting 15 Bootstrap[33]: Time 0.316636 seconds, bootstrap likelihood -2607.848786, best rearrangement setting 13 Bootstrap[34]: Time 0.243152 seconds, bootstrap likelihood -2608.136565, best rearrangement setting 12 Bootstrap[35]: Time 0.171579 seconds, bootstrap likelihood -2713.002518, best rearrangement setting 10 Bootstrap[36]: Time 0.183966 seconds, bootstrap likelihood -2684.185416, best rearrangement setting 15 Bootstrap[37]: Time 0.248141 seconds, bootstrap likelihood -2727.595786, best rearrangement setting 13 Bootstrap[38]: Time 0.263441 seconds, bootstrap likelihood -2644.763880, best rearrangement setting 11 Bootstrap[39]: Time 0.146583 seconds, bootstrap likelihood -2706.557610, best rearrangement setting 14 Bootstrap[40]: Time 0.118450 seconds, bootstrap likelihood -2604.573814, best rearrangement setting 7 Bootstrap[41]: Time 0.162798 seconds, bootstrap likelihood -2611.226673, best rearrangement setting 12 Bootstrap[42]: Time 0.095548 seconds, bootstrap likelihood -2715.194815, best rearrangement setting 11 Bootstrap[43]: Time 0.088077 seconds, bootstrap likelihood -2692.288702, best rearrangement setting 15 Bootstrap[44]: Time 0.127083 seconds, bootstrap likelihood -2634.324873, best rearrangement setting 10 Bootstrap[45]: Time 0.081469 seconds, bootstrap likelihood -2632.489980, best rearrangement setting 7 Bootstrap[46]: Time 0.210897 seconds, bootstrap likelihood -2667.008636, best rearrangement setting 8 Bootstrap[47]: Time 0.220022 seconds, bootstrap likelihood -2695.331872, best rearrangement setting 13 Bootstrap[48]: Time 0.207831 seconds, bootstrap likelihood -2629.679570, best rearrangement setting 5 Bootstrap[49]: Time 0.222472 seconds, bootstrap likelihood -2677.554039, best rearrangement setting 12 Bootstrap[50]: Time 0.178035 seconds, bootstrap likelihood -2621.931176, best rearrangement setting 5 Bootstrap[51]: Time 0.228362 seconds, bootstrap likelihood -2716.829818, best rearrangement setting 14 Bootstrap[52]: Time 0.215307 seconds, bootstrap likelihood -2765.192375, best rearrangement setting 9 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[53]: Time 0.187304 seconds, bootstrap likelihood -2688.501921, best rearrangement setting 10 Bootstrap[54]: Time 0.187344 seconds, bootstrap likelihood -2702.735808, best rearrangement setting 10 Bootstrap[55]: Time 0.101358 seconds, bootstrap likelihood -2635.796120, best rearrangement setting 5 Bootstrap[56]: Time 0.138413 seconds, bootstrap likelihood -2662.477679, best rearrangement setting 12 Bootstrap[57]: Time 0.082467 seconds, bootstrap likelihood -2733.106936, best rearrangement setting 5 Bootstrap[58]: Time 0.076006 seconds, bootstrap likelihood -2629.102099, best rearrangement setting 15 Bootstrap[59]: Time 0.087178 seconds, bootstrap likelihood -2667.804145, best rearrangement setting 11 Bootstrap[60]: Time 0.211508 seconds, bootstrap likelihood -2801.184953, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[61]: Time 0.299523 seconds, bootstrap likelihood -2571.441466, best rearrangement setting 14 Bootstrap[62]: Time 0.314662 seconds, bootstrap likelihood -2683.042634, best rearrangement setting 11 Bootstrap[63]: Time 0.261384 seconds, bootstrap likelihood -2715.349036, best rearrangement setting 13 Bootstrap[64]: Time 0.117927 seconds, bootstrap likelihood -2694.237631, best rearrangement setting 6 Bootstrap[65]: Time 0.125567 seconds, bootstrap likelihood -2619.722821, best rearrangement setting 9 Bootstrap[66]: Time 0.171205 seconds, bootstrap likelihood -2740.038425, best rearrangement setting 5 Bootstrap[67]: Time 0.103423 seconds, bootstrap likelihood -2533.344396, best rearrangement setting 9 Bootstrap[68]: Time 0.157283 seconds, bootstrap likelihood -2582.552292, best rearrangement setting 6 Bootstrap[69]: Time 0.293065 seconds, bootstrap likelihood -2624.455707, best rearrangement setting 12 Bootstrap[70]: Time 0.092837 seconds, bootstrap likelihood -2614.304267, best rearrangement setting 7 Bootstrap[71]: Time 0.211052 seconds, bootstrap likelihood -2760.445616, best rearrangement setting 11 Bootstrap[72]: Time 0.197790 seconds, bootstrap likelihood -2813.572677, best rearrangement setting 6 Bootstrap[73]: Time 0.201459 seconds, bootstrap likelihood -2717.313502, best rearrangement setting 13 Bootstrap[74]: Time 0.116731 seconds, bootstrap likelihood -2670.324358, best rearrangement setting 11 Bootstrap[75]: Time 0.293999 seconds, bootstrap likelihood -2846.221949, best rearrangement setting 10 Bootstrap[76]: Time 0.197487 seconds, bootstrap likelihood -2694.385595, best rearrangement setting 12 Bootstrap[77]: Time 0.169753 seconds, bootstrap likelihood -2705.779836, best rearrangement setting 12 Bootstrap[78]: Time 0.086917 seconds, bootstrap likelihood -2619.736361, best rearrangement setting 6 Bootstrap[79]: Time 0.161667 seconds, bootstrap likelihood -2786.144346, best rearrangement setting 7 Bootstrap[80]: Time 0.140651 seconds, bootstrap likelihood -2682.816404, best rearrangement setting 14 Bootstrap[81]: Time 0.094768 seconds, bootstrap likelihood -2722.105380, best rearrangement setting 6 Bootstrap[82]: Time 0.091972 seconds, bootstrap likelihood -2646.018220, best rearrangement setting 7 Bootstrap[83]: Time 0.083006 seconds, bootstrap likelihood -2639.300352, best rearrangement setting 5 Bootstrap[84]: Time 0.112680 seconds, bootstrap likelihood -2711.769052, best rearrangement setting 13 Bootstrap[85]: Time 0.259243 seconds, bootstrap likelihood -2625.546105, best rearrangement setting 6 Bootstrap[86]: Time 0.168290 seconds, bootstrap likelihood -2698.151491, best rearrangement setting 9 Bootstrap[87]: Time 0.236456 seconds, bootstrap likelihood -2700.111188, best rearrangement setting 5 Bootstrap[88]: Time 0.185152 seconds, bootstrap likelihood -2615.986249, best rearrangement setting 5 Bootstrap[89]: Time 0.268521 seconds, bootstrap likelihood -2650.691136, best rearrangement setting 8 Bootstrap[90]: Time 0.278836 seconds, bootstrap likelihood -2587.880376, best rearrangement setting 6 Bootstrap[91]: Time 0.208819 seconds, bootstrap likelihood -2680.910231, best rearrangement setting 12 Bootstrap[92]: Time 0.218284 seconds, bootstrap likelihood -2706.050186, best rearrangement setting 13 Bootstrap[93]: Time 0.074938 seconds, bootstrap likelihood -2660.674492, best rearrangement setting 15 Bootstrap[94]: Time 0.091185 seconds, bootstrap likelihood -2701.350020, best rearrangement setting 13 Bootstrap[95]: Time 0.222492 seconds, bootstrap likelihood -2602.403092, best rearrangement setting 13 Bootstrap[96]: Time 0.248267 seconds, bootstrap likelihood -2663.548127, best rearrangement setting 12 Bootstrap[97]: Time 0.210286 seconds, bootstrap likelihood -2694.262264, best rearrangement setting 15 Bootstrap[98]: Time 0.238036 seconds, bootstrap likelihood -2721.104863, best rearrangement setting 8 Bootstrap[99]: Time 0.237309 seconds, bootstrap likelihood -2681.901705, best rearrangement setting 11 Bootstrap[100]: Time 0.201378 seconds, bootstrap likelihood -2670.028466, best rearrangement setting 15 Bootstrap[101]: Time 0.191668 seconds, bootstrap likelihood -2671.948821, best rearrangement setting 10 Bootstrap[102]: Time 0.235492 seconds, bootstrap likelihood -2687.526639, best rearrangement setting 12 Bootstrap[103]: Time 0.231815 seconds, bootstrap likelihood -2636.208443, best rearrangement setting 15 Bootstrap[104]: Time 0.112815 seconds, bootstrap likelihood -2648.834625, best rearrangement setting 5 Bootstrap[105]: Time 0.316658 seconds, bootstrap likelihood -2671.286956, best rearrangement setting 15 Bootstrap[106]: Time 0.208392 seconds, bootstrap likelihood -2679.066848, best rearrangement setting 10 Bootstrap[107]: Time 0.232122 seconds, bootstrap likelihood -2548.855218, best rearrangement setting 11 Bootstrap[108]: Time 0.173015 seconds, bootstrap likelihood -2547.519783, best rearrangement setting 5 Bootstrap[109]: Time 0.150191 seconds, bootstrap likelihood -2579.703483, best rearrangement setting 10 Bootstrap[110]: Time 0.190339 seconds, bootstrap likelihood -2635.856763, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[111]: Time 0.280550 seconds, bootstrap likelihood -2635.918014, best rearrangement setting 6 Bootstrap[112]: Time 0.237975 seconds, bootstrap likelihood -2673.208660, best rearrangement setting 12 Bootstrap[113]: Time 0.183890 seconds, bootstrap likelihood -2626.846147, best rearrangement setting 8 Bootstrap[114]: Time 0.225507 seconds, bootstrap likelihood -2661.618100, best rearrangement setting 12 Bootstrap[115]: Time 0.207800 seconds, bootstrap likelihood -2682.995946, best rearrangement setting 9 Bootstrap[116]: Time 0.213281 seconds, bootstrap likelihood -2657.014056, best rearrangement setting 8 Bootstrap[117]: Time 0.093623 seconds, bootstrap likelihood -2598.799855, best rearrangement setting 8 Bootstrap[118]: Time 0.102601 seconds, bootstrap likelihood -2740.494075, best rearrangement setting 10 Bootstrap[119]: Time 0.202393 seconds, bootstrap likelihood -2676.477569, best rearrangement setting 14 Bootstrap[120]: Time 0.089566 seconds, bootstrap likelihood -2849.578040, best rearrangement setting 5 Bootstrap[121]: Time 0.077737 seconds, bootstrap likelihood -2565.354252, best rearrangement setting 9 Bootstrap[122]: Time 0.297607 seconds, bootstrap likelihood -2691.786363, best rearrangement setting 14 Bootstrap[123]: Time 0.229659 seconds, bootstrap likelihood -2703.594097, best rearrangement setting 5 Bootstrap[124]: Time 0.104112 seconds, bootstrap likelihood -2504.367017, best rearrangement setting 9 Bootstrap[125]: Time 0.302511 seconds, bootstrap likelihood -2625.988386, best rearrangement setting 9 Bootstrap[126]: Time 0.174306 seconds, bootstrap likelihood -2666.839906, best rearrangement setting 7 Bootstrap[127]: Time 0.246463 seconds, bootstrap likelihood -2586.994750, best rearrangement setting 6 Bootstrap[128]: Time 0.274301 seconds, bootstrap likelihood -2577.610660, best rearrangement setting 13 Bootstrap[129]: Time 0.292186 seconds, bootstrap likelihood -2705.983543, best rearrangement setting 14 Bootstrap[130]: Time 0.107205 seconds, bootstrap likelihood -2619.144674, best rearrangement setting 11 Bootstrap[131]: Time 0.114953 seconds, bootstrap likelihood -2766.368644, best rearrangement setting 13 Bootstrap[132]: Time 0.134867 seconds, bootstrap likelihood -2626.040738, best rearrangement setting 7 Bootstrap[133]: Time 0.193735 seconds, bootstrap likelihood -2633.593376, best rearrangement setting 8 Bootstrap[134]: Time 0.174868 seconds, bootstrap likelihood -2660.558064, best rearrangement setting 14 Bootstrap[135]: Time 0.253558 seconds, bootstrap likelihood -2539.175554, best rearrangement setting 9 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[136]: Time 0.212940 seconds, bootstrap likelihood -2698.830716, best rearrangement setting 6 Bootstrap[137]: Time 0.175145 seconds, bootstrap likelihood -2768.222910, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[138]: Time 0.172668 seconds, bootstrap likelihood -2619.229298, best rearrangement setting 13 Bootstrap[139]: Time 0.155990 seconds, bootstrap likelihood -2643.451607, best rearrangement setting 5 Bootstrap[140]: Time 0.203968 seconds, bootstrap likelihood -2673.976693, best rearrangement setting 6 Bootstrap[141]: Time 0.189004 seconds, bootstrap likelihood -2610.747559, best rearrangement setting 8 Bootstrap[142]: Time 0.233563 seconds, bootstrap likelihood -2835.440576, best rearrangement setting 12 Bootstrap[143]: Time 0.139755 seconds, bootstrap likelihood -2641.847971, best rearrangement setting 6 Bootstrap[144]: Time 0.217548 seconds, bootstrap likelihood -2639.086423, best rearrangement setting 9 Bootstrap[145]: Time 0.170276 seconds, bootstrap likelihood -2581.774688, best rearrangement setting 6 Bootstrap[146]: Time 0.101242 seconds, bootstrap likelihood -2663.486948, best rearrangement setting 6 Bootstrap[147]: Time 0.211472 seconds, bootstrap likelihood -2572.266306, best rearrangement setting 12 Bootstrap[148]: Time 0.248905 seconds, bootstrap likelihood -2740.458794, best rearrangement setting 8 Bootstrap[149]: Time 0.093191 seconds, bootstrap likelihood -2732.664643, best rearrangement setting 10 Bootstrap[150]: Time 0.100133 seconds, bootstrap likelihood -2657.819894, best rearrangement setting 9 Bootstrap[151]: Time 0.136297 seconds, bootstrap likelihood -2678.774692, best rearrangement setting 7 Bootstrap[152]: Time 0.185961 seconds, bootstrap likelihood -2644.913111, best rearrangement setting 9 Bootstrap[153]: Time 0.106739 seconds, bootstrap likelihood -2534.325892, best rearrangement setting 10 Bootstrap[154]: Time 0.197053 seconds, bootstrap likelihood -2808.256357, best rearrangement setting 6 Bootstrap[155]: Time 0.174429 seconds, bootstrap likelihood -2660.934035, best rearrangement setting 14 Bootstrap[156]: Time 0.284971 seconds, bootstrap likelihood -2690.820162, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[157]: Time 0.312625 seconds, bootstrap likelihood -2694.415376, best rearrangement setting 15 Bootstrap[158]: Time 0.186948 seconds, bootstrap likelihood -2623.526229, best rearrangement setting 13 Bootstrap[159]: Time 0.217671 seconds, bootstrap likelihood -2717.984492, best rearrangement setting 9 Bootstrap[160]: Time 0.210140 seconds, bootstrap likelihood -2608.614402, best rearrangement setting 13 Bootstrap[161]: Time 0.152994 seconds, bootstrap likelihood -2590.725979, best rearrangement setting 15 Bootstrap[162]: Time 0.192015 seconds, bootstrap likelihood -2690.208413, best rearrangement setting 7 Bootstrap[163]: Time 0.155911 seconds, bootstrap likelihood -2611.201478, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[164]: Time 0.163023 seconds, bootstrap likelihood -2619.565328, best rearrangement setting 15 Bootstrap[165]: Time 0.174104 seconds, bootstrap likelihood -2645.514225, best rearrangement setting 9 Bootstrap[166]: Time 0.180786 seconds, bootstrap likelihood -2681.572196, best rearrangement setting 6 Bootstrap[167]: Time 0.166577 seconds, bootstrap likelihood -2618.963994, best rearrangement setting 15 Bootstrap[168]: Time 0.082814 seconds, bootstrap likelihood -2837.076727, best rearrangement setting 8 Bootstrap[169]: Time 0.252732 seconds, bootstrap likelihood -2697.837710, best rearrangement setting 5 Bootstrap[170]: Time 0.185250 seconds, bootstrap likelihood -2622.866277, best rearrangement setting 6 Bootstrap[171]: Time 0.105396 seconds, bootstrap likelihood -2585.264422, best rearrangement setting 15 Bootstrap[172]: Time 0.202082 seconds, bootstrap likelihood -2604.785272, best rearrangement setting 13 Bootstrap[173]: Time 0.191920 seconds, bootstrap likelihood -2740.889013, best rearrangement setting 15 Bootstrap[174]: Time 0.071361 seconds, bootstrap likelihood -2521.182574, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[175]: Time 0.236788 seconds, bootstrap likelihood -2657.737078, best rearrangement setting 7 Bootstrap[176]: Time 0.231278 seconds, bootstrap likelihood -2762.465295, best rearrangement setting 13 Bootstrap[177]: Time 0.146939 seconds, bootstrap likelihood -2701.972473, best rearrangement setting 8 Bootstrap[178]: Time 0.231369 seconds, bootstrap likelihood -2717.489498, best rearrangement setting 12 Bootstrap[179]: Time 0.125931 seconds, bootstrap likelihood -2507.752374, best rearrangement setting 6 Bootstrap[180]: Time 0.075570 seconds, bootstrap likelihood -2697.794566, best rearrangement setting 10 Bootstrap[181]: Time 0.191973 seconds, bootstrap likelihood -2591.789683, best rearrangement setting 14 Bootstrap[182]: Time 0.213523 seconds, bootstrap likelihood -2623.747521, best rearrangement setting 5 Bootstrap[183]: Time 0.229700 seconds, bootstrap likelihood -2546.976701, best rearrangement setting 6 Bootstrap[184]: Time 0.207854 seconds, bootstrap likelihood -2523.663255, best rearrangement setting 12 Bootstrap[185]: Time 0.170021 seconds, bootstrap likelihood -2709.284766, best rearrangement setting 6 Bootstrap[186]: Time 0.078494 seconds, bootstrap likelihood -2698.531431, best rearrangement setting 8 Bootstrap[187]: Time 0.274854 seconds, bootstrap likelihood -2663.995687, best rearrangement setting 7 Bootstrap[188]: Time 0.151153 seconds, bootstrap likelihood -2707.207176, best rearrangement setting 12 Bootstrap[189]: Time 0.129114 seconds, bootstrap likelihood -2694.754508, best rearrangement setting 12 Bootstrap[190]: Time 0.206405 seconds, bootstrap likelihood -2694.314281, best rearrangement setting 12 Bootstrap[191]: Time 0.233626 seconds, bootstrap likelihood -2694.571905, best rearrangement setting 11 Bootstrap[192]: Time 0.196541 seconds, bootstrap likelihood -2704.746711, best rearrangement setting 7 Bootstrap[193]: Time 0.211612 seconds, bootstrap likelihood -2726.501592, best rearrangement setting 8 Bootstrap[194]: Time 0.207715 seconds, bootstrap likelihood -2558.662684, best rearrangement setting 15 Bootstrap[195]: Time 0.152528 seconds, bootstrap likelihood -2651.552125, best rearrangement setting 9 Bootstrap[196]: Time 0.212954 seconds, bootstrap likelihood -2833.980175, best rearrangement setting 9 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[197]: Time 0.196542 seconds, bootstrap likelihood -2651.896627, best rearrangement setting 8 Bootstrap[198]: Time 0.168061 seconds, bootstrap likelihood -2636.814177, best rearrangement setting 5 Bootstrap[199]: Time 0.076703 seconds, bootstrap likelihood -2685.209466, best rearrangement setting 9 Bootstrap[200]: Time 0.144346 seconds, bootstrap likelihood -2686.676201, best rearrangement setting 8 Bootstrap[201]: Time 0.085409 seconds, bootstrap likelihood -2691.077267, best rearrangement setting 15 Bootstrap[202]: Time 0.183542 seconds, bootstrap likelihood -2616.816854, best rearrangement setting 10 Bootstrap[203]: Time 0.225730 seconds, bootstrap likelihood -2711.345142, best rearrangement setting 11 Bootstrap[204]: Time 0.181945 seconds, bootstrap likelihood -2804.986795, best rearrangement setting 6 Bootstrap[205]: Time 0.190565 seconds, bootstrap likelihood -2685.008490, best rearrangement setting 11 Bootstrap[206]: Time 0.192161 seconds, bootstrap likelihood -2638.060070, best rearrangement setting 14 Bootstrap[207]: Time 0.182987 seconds, bootstrap likelihood -2725.942045, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[208]: Time 0.246471 seconds, bootstrap likelihood -2607.482745, best rearrangement setting 7 Bootstrap[209]: Time 0.282060 seconds, bootstrap likelihood -2651.366728, best rearrangement setting 6 Bootstrap[210]: Time 0.100790 seconds, bootstrap likelihood -2694.600362, best rearrangement setting 10 Bootstrap[211]: Time 0.227211 seconds, bootstrap likelihood -2753.143332, best rearrangement setting 15 Bootstrap[212]: Time 0.221469 seconds, bootstrap likelihood -2650.149136, best rearrangement setting 14 Bootstrap[213]: Time 0.136249 seconds, bootstrap likelihood -2695.816961, best rearrangement setting 8 Bootstrap[214]: Time 0.215837 seconds, bootstrap likelihood -2608.363011, best rearrangement setting 10 Bootstrap[215]: Time 0.143798 seconds, bootstrap likelihood -2555.335640, best rearrangement setting 11 Bootstrap[216]: Time 0.182751 seconds, bootstrap likelihood -2662.243769, best rearrangement setting 6 Bootstrap[217]: Time 0.082839 seconds, bootstrap likelihood -2594.406780, best rearrangement setting 5 Bootstrap[218]: Time 0.113927 seconds, bootstrap likelihood -2707.554933, best rearrangement setting 14 Bootstrap[219]: Time 0.080935 seconds, bootstrap likelihood -2704.032911, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[220]: Time 0.242493 seconds, bootstrap likelihood -2677.500737, best rearrangement setting 12 Bootstrap[221]: Time 0.181094 seconds, bootstrap likelihood -2663.833253, best rearrangement setting 14 Bootstrap[222]: Time 0.207078 seconds, bootstrap likelihood -2685.991905, best rearrangement setting 9 Bootstrap[223]: Time 0.229951 seconds, bootstrap likelihood -2621.628170, best rearrangement setting 5 Bootstrap[224]: Time 0.293394 seconds, bootstrap likelihood -2681.147718, best rearrangement setting 5 Bootstrap[225]: Time 0.225296 seconds, bootstrap likelihood -2599.683682, best rearrangement setting 7 Bootstrap[226]: Time 0.240525 seconds, bootstrap likelihood -2620.760052, best rearrangement setting 11 Bootstrap[227]: Time 0.206485 seconds, bootstrap likelihood -2680.093845, best rearrangement setting 12 Bootstrap[228]: Time 0.158444 seconds, bootstrap likelihood -2664.722693, best rearrangement setting 5 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[229]: Time 0.203452 seconds, bootstrap likelihood -2753.127622, best rearrangement setting 5 Bootstrap[230]: Time 0.234084 seconds, bootstrap likelihood -2684.478605, best rearrangement setting 9 Bootstrap[231]: Time 0.149495 seconds, bootstrap likelihood -2568.460838, best rearrangement setting 7 Bootstrap[232]: Time 0.100262 seconds, bootstrap likelihood -2642.073596, best rearrangement setting 11 Bootstrap[233]: Time 0.080820 seconds, bootstrap likelihood -2658.881052, best rearrangement setting 13 Bootstrap[234]: Time 0.152203 seconds, bootstrap likelihood -2586.743473, best rearrangement setting 5 Bootstrap[235]: Time 0.156669 seconds, bootstrap likelihood -2694.392201, best rearrangement setting 11 Bootstrap[236]: Time 0.280674 seconds, bootstrap likelihood -2556.341300, best rearrangement setting 10 Bootstrap[237]: Time 0.255371 seconds, bootstrap likelihood -2648.682915, best rearrangement setting 11 Bootstrap[238]: Time 0.206552 seconds, bootstrap likelihood -2690.003088, best rearrangement setting 10 Bootstrap[239]: Time 0.192017 seconds, bootstrap likelihood -2641.240113, best rearrangement setting 12 Bootstrap[240]: Time 0.104418 seconds, bootstrap likelihood -2667.905756, best rearrangement setting 7 Bootstrap[241]: Time 0.083154 seconds, bootstrap likelihood -2685.145323, best rearrangement setting 5 Bootstrap[242]: Time 0.075857 seconds, bootstrap likelihood -2668.437876, best rearrangement setting 7 Bootstrap[243]: Time 0.170586 seconds, bootstrap likelihood -2616.640520, best rearrangement setting 15 Bootstrap[244]: Time 0.190407 seconds, bootstrap likelihood -2660.113753, best rearrangement setting 8 Bootstrap[245]: Time 0.204916 seconds, bootstrap likelihood -2585.994989, best rearrangement setting 13 Bootstrap[246]: Time 0.144696 seconds, bootstrap likelihood -2619.535758, best rearrangement setting 7 Bootstrap[247]: Time 0.244496 seconds, bootstrap likelihood -2571.805309, best rearrangement setting 5 Bootstrap[248]: Time 0.098365 seconds, bootstrap likelihood -2682.143175, best rearrangement setting 5 Bootstrap[249]: Time 0.103207 seconds, bootstrap likelihood -2847.870644, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[250]: Time 0.188240 seconds, bootstrap likelihood -2748.671894, best rearrangement setting 13 Bootstrap[251]: Time 0.238488 seconds, bootstrap likelihood -2563.847839, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[252]: Time 0.230449 seconds, bootstrap likelihood -2634.678005, best rearrangement setting 5 Bootstrap[253]: Time 0.180769 seconds, bootstrap likelihood -2719.181329, best rearrangement setting 14 Bootstrap[254]: Time 0.212371 seconds, bootstrap likelihood -2765.772550, best rearrangement setting 14 Bootstrap[255]: Time 0.142640 seconds, bootstrap likelihood -2723.987565, best rearrangement setting 6 Bootstrap[256]: Time 0.167000 seconds, bootstrap likelihood -2779.241225, best rearrangement setting 9 Bootstrap[257]: Time 0.096979 seconds, bootstrap likelihood -2698.334919, best rearrangement setting 7 Bootstrap[258]: Time 0.105988 seconds, bootstrap likelihood -2711.924372, best rearrangement setting 7 Bootstrap[259]: Time 0.131770 seconds, bootstrap likelihood -2550.192075, best rearrangement setting 9 Bootstrap[260]: Time 0.085604 seconds, bootstrap likelihood -2749.659278, best rearrangement setting 13 Bootstrap[261]: Time 0.121915 seconds, bootstrap likelihood -2523.498113, best rearrangement setting 9 Bootstrap[262]: Time 0.078809 seconds, bootstrap likelihood -2709.137468, best rearrangement setting 8 Bootstrap[263]: Time 0.245095 seconds, bootstrap likelihood -2594.639209, best rearrangement setting 14 Bootstrap[264]: Time 0.198834 seconds, bootstrap likelihood -2689.379222, best rearrangement setting 6 Bootstrap[265]: Time 0.081344 seconds, bootstrap likelihood -2557.474705, best rearrangement setting 13 Bootstrap[266]: Time 0.225169 seconds, bootstrap likelihood -2676.262935, best rearrangement setting 7 Bootstrap[267]: Time 0.220655 seconds, bootstrap likelihood -2737.280526, best rearrangement setting 12 Bootstrap[268]: Time 0.085523 seconds, bootstrap likelihood -2792.703239, best rearrangement setting 9 Bootstrap[269]: Time 0.113321 seconds, bootstrap likelihood -2636.930808, best rearrangement setting 12 Bootstrap[270]: Time 0.095417 seconds, bootstrap likelihood -2684.723131, best rearrangement setting 11 Bootstrap[271]: Time 0.262938 seconds, bootstrap likelihood -2643.194249, best rearrangement setting 6 Bootstrap[272]: Time 0.186578 seconds, bootstrap likelihood -2740.339015, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[273]: Time 0.252309 seconds, bootstrap likelihood -2753.919468, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[274]: Time 0.265929 seconds, bootstrap likelihood -2653.846805, best rearrangement setting 9 Bootstrap[275]: Time 0.224910 seconds, bootstrap likelihood -2682.034613, best rearrangement setting 15 Bootstrap[276]: Time 0.252627 seconds, bootstrap likelihood -2692.053970, best rearrangement setting 10 Bootstrap[277]: Time 0.162571 seconds, bootstrap likelihood -2769.140141, best rearrangement setting 8 Bootstrap[278]: Time 0.194143 seconds, bootstrap likelihood -2630.485086, best rearrangement setting 15 Bootstrap[279]: Time 0.158531 seconds, bootstrap likelihood -2641.771841, best rearrangement setting 7 Bootstrap[280]: Time 0.155570 seconds, bootstrap likelihood -2754.119789, best rearrangement setting 13 Bootstrap[281]: Time 0.078741 seconds, bootstrap likelihood -2638.836260, best rearrangement setting 13 Bootstrap[282]: Time 0.148906 seconds, bootstrap likelihood -2557.167136, best rearrangement setting 15 Bootstrap[283]: Time 0.201784 seconds, bootstrap likelihood -2671.769631, best rearrangement setting 7 Bootstrap[284]: Time 0.192151 seconds, bootstrap likelihood -2745.518666, best rearrangement setting 15 Bootstrap[285]: Time 0.210880 seconds, bootstrap likelihood -2591.328301, best rearrangement setting 12 Bootstrap[286]: Time 0.165157 seconds, bootstrap likelihood -2622.242404, best rearrangement setting 13 Bootstrap[287]: Time 0.208728 seconds, bootstrap likelihood -2674.456572, best rearrangement setting 12 Bootstrap[288]: Time 0.266387 seconds, bootstrap likelihood -2611.076436, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[289]: Time 0.274012 seconds, bootstrap likelihood -2762.478220, best rearrangement setting 6 Bootstrap[290]: Time 0.094405 seconds, bootstrap likelihood -2779.070632, best rearrangement setting 8 Bootstrap[291]: Time 0.233036 seconds, bootstrap likelihood -2738.005333, best rearrangement setting 12 Bootstrap[292]: Time 0.225535 seconds, bootstrap likelihood -2655.376042, best rearrangement setting 10 Bootstrap[293]: Time 0.174199 seconds, bootstrap likelihood -2665.449783, best rearrangement setting 5 Bootstrap[294]: Time 0.195100 seconds, bootstrap likelihood -2721.557763, best rearrangement setting 14 Bootstrap[295]: Time 0.176707 seconds, bootstrap likelihood -2706.545758, best rearrangement setting 5 Bootstrap[296]: Time 0.199032 seconds, bootstrap likelihood -2705.068382, best rearrangement setting 6 Bootstrap[297]: Time 0.214676 seconds, bootstrap likelihood -2626.101588, best rearrangement setting 6 Bootstrap[298]: Time 0.233957 seconds, bootstrap likelihood -2660.801397, best rearrangement setting 14 Bootstrap[299]: Time 0.201066 seconds, bootstrap likelihood -2626.680054, best rearrangement setting 14 Bootstrap[300]: Time 0.089423 seconds, bootstrap likelihood -2763.300663, best rearrangement setting 13 Bootstrap[301]: Time 0.247968 seconds, bootstrap likelihood -2712.568839, best rearrangement setting 12 Bootstrap[302]: Time 0.243493 seconds, bootstrap likelihood -2738.956879, best rearrangement setting 12 Bootstrap[303]: Time 0.305096 seconds, bootstrap likelihood -2685.712862, best rearrangement setting 9 Bootstrap[304]: Time 0.183725 seconds, bootstrap likelihood -2790.902941, best rearrangement setting 5 Bootstrap[305]: Time 0.146457 seconds, bootstrap likelihood -2574.959831, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[306]: Time 0.205986 seconds, bootstrap likelihood -2684.831020, best rearrangement setting 8 Bootstrap[307]: Time 0.196549 seconds, bootstrap likelihood -2683.005912, best rearrangement setting 6 Bootstrap[308]: Time 0.081356 seconds, bootstrap likelihood -2629.006517, best rearrangement setting 14 Bootstrap[309]: Time 0.174774 seconds, bootstrap likelihood -2636.466582, best rearrangement setting 10 Bootstrap[310]: Time 0.084494 seconds, bootstrap likelihood -2694.269802, best rearrangement setting 11 Bootstrap[311]: Time 0.175688 seconds, bootstrap likelihood -2642.277083, best rearrangement setting 5 Bootstrap[312]: Time 0.188209 seconds, bootstrap likelihood -2703.053496, best rearrangement setting 9 Bootstrap[313]: Time 0.108649 seconds, bootstrap likelihood -2717.513712, best rearrangement setting 8 Bootstrap[314]: Time 0.295927 seconds, bootstrap likelihood -2685.625409, best rearrangement setting 14 Bootstrap[315]: Time 0.193723 seconds, bootstrap likelihood -2764.397514, best rearrangement setting 12 Bootstrap[316]: Time 0.239301 seconds, bootstrap likelihood -2739.092027, best rearrangement setting 5 Bootstrap[317]: Time 0.177168 seconds, bootstrap likelihood -2743.412511, best rearrangement setting 6 Bootstrap[318]: Time 0.250775 seconds, bootstrap likelihood -2811.400429, best rearrangement setting 10 Bootstrap[319]: Time 0.180761 seconds, bootstrap likelihood -2715.612251, best rearrangement setting 10 Bootstrap[320]: Time 0.101754 seconds, bootstrap likelihood -2583.377965, best rearrangement setting 7 Bootstrap[321]: Time 0.212352 seconds, bootstrap likelihood -2764.792714, best rearrangement setting 15 Bootstrap[322]: Time 0.285234 seconds, bootstrap likelihood -2676.307684, best rearrangement setting 10 Bootstrap[323]: Time 0.123389 seconds, bootstrap likelihood -2607.928117, best rearrangement setting 12 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[324]: Time 0.245273 seconds, bootstrap likelihood -2766.288371, best rearrangement setting 10 Bootstrap[325]: Time 0.282458 seconds, bootstrap likelihood -2666.623646, best rearrangement setting 8 Bootstrap[326]: Time 0.217580 seconds, bootstrap likelihood -2696.370699, best rearrangement setting 13 Bootstrap[327]: Time 0.210892 seconds, bootstrap likelihood -2708.689703, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[328]: Time 0.253766 seconds, bootstrap likelihood -2621.497617, best rearrangement setting 5 Bootstrap[329]: Time 0.240113 seconds, bootstrap likelihood -2674.703466, best rearrangement setting 11 Bootstrap[330]: Time 0.217658 seconds, bootstrap likelihood -2825.475958, best rearrangement setting 12 Bootstrap[331]: Time 0.196993 seconds, bootstrap likelihood -2624.673195, best rearrangement setting 12 Bootstrap[332]: Time 0.182371 seconds, bootstrap likelihood -2572.917400, best rearrangement setting 12 Bootstrap[333]: Time 0.197405 seconds, bootstrap likelihood -2770.875732, best rearrangement setting 12 Bootstrap[334]: Time 0.164666 seconds, bootstrap likelihood -2583.365877, best rearrangement setting 12 Bootstrap[335]: Time 0.090089 seconds, bootstrap likelihood -2675.623031, best rearrangement setting 11 Bootstrap[336]: Time 0.174531 seconds, bootstrap likelihood -2715.833024, best rearrangement setting 6 Bootstrap[337]: Time 0.078580 seconds, bootstrap likelihood -2642.951895, best rearrangement setting 14 Bootstrap[338]: Time 0.098221 seconds, bootstrap likelihood -2730.427953, best rearrangement setting 5 Bootstrap[339]: Time 0.076388 seconds, bootstrap likelihood -2593.707974, best rearrangement setting 12 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[340]: Time 0.196610 seconds, bootstrap likelihood -2588.002393, best rearrangement setting 9 Bootstrap[341]: Time 0.209843 seconds, bootstrap likelihood -2647.313223, best rearrangement setting 5 Bootstrap[342]: Time 0.199912 seconds, bootstrap likelihood -2635.970914, best rearrangement setting 7 Bootstrap[343]: Time 0.117313 seconds, bootstrap likelihood -2583.388331, best rearrangement setting 10 Bootstrap[344]: Time 0.233761 seconds, bootstrap likelihood -2656.540649, best rearrangement setting 14 Bootstrap[345]: Time 0.187020 seconds, bootstrap likelihood -2631.451773, best rearrangement setting 11 Bootstrap[346]: Time 0.172652 seconds, bootstrap likelihood -2638.098184, best rearrangement setting 5 Bootstrap[347]: Time 0.222022 seconds, bootstrap likelihood -2591.467341, best rearrangement setting 8 Bootstrap[348]: Time 0.184055 seconds, bootstrap likelihood -2734.687408, best rearrangement setting 14 Bootstrap[349]: Time 0.155184 seconds, bootstrap likelihood -2571.213110, best rearrangement setting 12 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[350]: Time 0.291332 seconds, bootstrap likelihood -2564.399505, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[351]: Time 0.219485 seconds, bootstrap likelihood -2695.056791, best rearrangement setting 14 Bootstrap[352]: Time 0.199661 seconds, bootstrap likelihood -2708.997165, best rearrangement setting 8 Bootstrap[353]: Time 0.102770 seconds, bootstrap likelihood -2654.318854, best rearrangement setting 5 Bootstrap[354]: Time 0.230399 seconds, bootstrap likelihood -2702.532394, best rearrangement setting 12 Bootstrap[355]: Time 0.198295 seconds, bootstrap likelihood -2641.506920, best rearrangement setting 5 Bootstrap[356]: Time 0.197299 seconds, bootstrap likelihood -2726.894221, best rearrangement setting 9 Bootstrap[357]: Time 0.148391 seconds, bootstrap likelihood -2693.496511, best rearrangement setting 6 Bootstrap[358]: Time 0.110867 seconds, bootstrap likelihood -2611.341812, best rearrangement setting 12 Bootstrap[359]: Time 0.096583 seconds, bootstrap likelihood -2745.216824, best rearrangement setting 12 Bootstrap[360]: Time 0.076123 seconds, bootstrap likelihood -2653.855475, best rearrangement setting 11 Bootstrap[361]: Time 0.189265 seconds, bootstrap likelihood -2762.938440, best rearrangement setting 15 Bootstrap[362]: Time 0.073943 seconds, bootstrap likelihood -2761.917388, best rearrangement setting 5 Bootstrap[363]: Time 0.122722 seconds, bootstrap likelihood -2609.833106, best rearrangement setting 10 Bootstrap[364]: Time 0.080927 seconds, bootstrap likelihood -2640.287246, best rearrangement setting 9 Bootstrap[365]: Time 0.154584 seconds, bootstrap likelihood -2611.828488, best rearrangement setting 7 Bootstrap[366]: Time 0.205158 seconds, bootstrap likelihood -2668.573527, best rearrangement setting 12 Bootstrap[367]: Time 0.094054 seconds, bootstrap likelihood -2592.081160, best rearrangement setting 5 Bootstrap[368]: Time 0.082582 seconds, bootstrap likelihood -2727.979350, best rearrangement setting 6 Bootstrap[369]: Time 0.255786 seconds, bootstrap likelihood -2605.858838, best rearrangement setting 6 Bootstrap[370]: Time 0.084354 seconds, bootstrap likelihood -2633.812290, best rearrangement setting 6 Bootstrap[371]: Time 0.089308 seconds, bootstrap likelihood -2634.274159, best rearrangement setting 9 Bootstrap[372]: Time 0.206109 seconds, bootstrap likelihood -2664.344724, best rearrangement setting 8 Bootstrap[373]: Time 0.200046 seconds, bootstrap likelihood -2671.439686, best rearrangement setting 15 Bootstrap[374]: Time 0.223762 seconds, bootstrap likelihood -2656.406440, best rearrangement setting 8 Bootstrap[375]: Time 0.268309 seconds, bootstrap likelihood -2657.283827, best rearrangement setting 6 Bootstrap[376]: Time 0.280705 seconds, bootstrap likelihood -2786.194827, best rearrangement setting 9 Bootstrap[377]: Time 0.265653 seconds, bootstrap likelihood -2560.094550, best rearrangement setting 11 Bootstrap[378]: Time 0.228837 seconds, bootstrap likelihood -2627.109047, best rearrangement setting 7 Bootstrap[379]: Time 0.161931 seconds, bootstrap likelihood -2729.803463, best rearrangement setting 5 Bootstrap[380]: Time 0.078822 seconds, bootstrap likelihood -2573.704284, best rearrangement setting 9 Bootstrap[381]: Time 0.252224 seconds, bootstrap likelihood -2683.389629, best rearrangement setting 12 Bootstrap[382]: Time 0.249044 seconds, bootstrap likelihood -2740.490270, best rearrangement setting 10 Bootstrap[383]: Time 0.284004 seconds, bootstrap likelihood -2632.600087, best rearrangement setting 8 Bootstrap[384]: Time 0.212508 seconds, bootstrap likelihood -2599.574444, best rearrangement setting 13 Bootstrap[385]: Time 0.218951 seconds, bootstrap likelihood -2653.363755, best rearrangement setting 14 Bootstrap[386]: Time 0.293251 seconds, bootstrap likelihood -2653.774214, best rearrangement setting 14 Bootstrap[387]: Time 0.223332 seconds, bootstrap likelihood -2736.526428, best rearrangement setting 9 Bootstrap[388]: Time 0.176117 seconds, bootstrap likelihood -2687.152685, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[389]: Time 0.238240 seconds, bootstrap likelihood -2558.232664, best rearrangement setting 10 Bootstrap[390]: Time 0.208059 seconds, bootstrap likelihood -2657.115333, best rearrangement setting 14 Bootstrap[391]: Time 0.218461 seconds, bootstrap likelihood -2689.425411, best rearrangement setting 14 Bootstrap[392]: Time 0.246419 seconds, bootstrap likelihood -2649.382183, best rearrangement setting 11 Bootstrap[393]: Time 0.197659 seconds, bootstrap likelihood -2645.329207, best rearrangement setting 8 Bootstrap[394]: Time 0.206156 seconds, bootstrap likelihood -2613.747880, best rearrangement setting 8 Bootstrap[395]: Time 0.186486 seconds, bootstrap likelihood -2589.809366, best rearrangement setting 7 Bootstrap[396]: Time 0.124462 seconds, bootstrap likelihood -2644.882251, best rearrangement setting 11 Bootstrap[397]: Time 0.197086 seconds, bootstrap likelihood -2598.430446, best rearrangement setting 14 Bootstrap[398]: Time 0.174541 seconds, bootstrap likelihood -2757.313246, best rearrangement setting 15 Bootstrap[399]: Time 0.192707 seconds, bootstrap likelihood -2655.629004, best rearrangement setting 9 Bootstrap[400]: Time 0.095472 seconds, bootstrap likelihood -2598.310786, best rearrangement setting 15 Bootstrap[401]: Time 0.147282 seconds, bootstrap likelihood -2559.532035, best rearrangement setting 8 Bootstrap[402]: Time 0.097277 seconds, bootstrap likelihood -2697.244989, best rearrangement setting 8 Bootstrap[403]: Time 0.200882 seconds, bootstrap likelihood -2579.679097, best rearrangement setting 6 Bootstrap[404]: Time 0.102051 seconds, bootstrap likelihood -2656.935436, best rearrangement setting 15 Bootstrap[405]: Time 0.197785 seconds, bootstrap likelihood -2686.669980, best rearrangement setting 7 Bootstrap[406]: Time 0.107121 seconds, bootstrap likelihood -2671.388149, best rearrangement setting 10 Bootstrap[407]: Time 0.164389 seconds, bootstrap likelihood -2667.830404, best rearrangement setting 11 Bootstrap[408]: Time 0.075962 seconds, bootstrap likelihood -2734.426106, best rearrangement setting 11 Bootstrap[409]: Time 0.220254 seconds, bootstrap likelihood -2681.362790, best rearrangement setting 10 Bootstrap[410]: Time 0.251602 seconds, bootstrap likelihood -2638.292293, best rearrangement setting 10 Bootstrap[411]: Time 0.175482 seconds, bootstrap likelihood -2667.277378, best rearrangement setting 10 Bootstrap[412]: Time 0.330232 seconds, bootstrap likelihood -2676.940241, best rearrangement setting 15 Bootstrap[413]: Time 0.303033 seconds, bootstrap likelihood -2645.067843, best rearrangement setting 14 Bootstrap[414]: Time 0.199808 seconds, bootstrap likelihood -2591.788679, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[415]: Time 0.170278 seconds, bootstrap likelihood -2689.070893, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[416]: Time 0.294216 seconds, bootstrap likelihood -2710.039748, best rearrangement setting 6 Bootstrap[417]: Time 0.252176 seconds, bootstrap likelihood -2648.797805, best rearrangement setting 8 Bootstrap[418]: Time 0.177684 seconds, bootstrap likelihood -2760.862179, best rearrangement setting 11 Bootstrap[419]: Time 0.092245 seconds, bootstrap likelihood -2781.489893, best rearrangement setting 13 Bootstrap[420]: Time 0.110973 seconds, bootstrap likelihood -2603.252952, best rearrangement setting 6 Bootstrap[421]: Time 0.081234 seconds, bootstrap likelihood -2766.391655, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[422]: Time 0.256772 seconds, bootstrap likelihood -2638.021493, best rearrangement setting 9 Bootstrap[423]: Time 0.250950 seconds, bootstrap likelihood -2682.737918, best rearrangement setting 8 Bootstrap[424]: Time 0.184801 seconds, bootstrap likelihood -2711.943948, best rearrangement setting 7 Bootstrap[425]: Time 0.173677 seconds, bootstrap likelihood -2629.764851, best rearrangement setting 6 Bootstrap[426]: Time 0.105482 seconds, bootstrap likelihood -2641.839684, best rearrangement setting 7 Bootstrap[427]: Time 0.202025 seconds, bootstrap likelihood -2681.508964, best rearrangement setting 14 Bootstrap[428]: Time 0.196720 seconds, bootstrap likelihood -2617.417187, best rearrangement setting 5 Bootstrap[429]: Time 0.232079 seconds, bootstrap likelihood -2624.458963, best rearrangement setting 10 Bootstrap[430]: Time 0.259773 seconds, bootstrap likelihood -2703.505338, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[431]: Time 0.294770 seconds, bootstrap likelihood -2612.985645, best rearrangement setting 10 Bootstrap[432]: Time 0.262693 seconds, bootstrap likelihood -2608.405595, best rearrangement setting 10 Bootstrap[433]: Time 0.198386 seconds, bootstrap likelihood -2682.753684, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[434]: Time 0.208599 seconds, bootstrap likelihood -2686.714477, best rearrangement setting 12 Bootstrap[435]: Time 0.180720 seconds, bootstrap likelihood -2702.692373, best rearrangement setting 15 Bootstrap[436]: Time 0.201892 seconds, bootstrap likelihood -2650.402246, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[437]: Time 0.313422 seconds, bootstrap likelihood -2594.817327, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[438]: Time 0.191471 seconds, bootstrap likelihood -2803.815923, best rearrangement setting 12 Bootstrap[439]: Time 0.300967 seconds, bootstrap likelihood -2664.757135, best rearrangement setting 13 Bootstrap[440]: Time 0.182285 seconds, bootstrap likelihood -2573.157744, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[441]: Time 0.193110 seconds, bootstrap likelihood -2573.939569, best rearrangement setting 13 Bootstrap[442]: Time 0.194371 seconds, bootstrap likelihood -2675.601928, best rearrangement setting 8 Bootstrap[443]: Time 0.104622 seconds, bootstrap likelihood -2690.692761, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[444]: Time 0.217342 seconds, bootstrap likelihood -2824.121038, best rearrangement setting 14 Bootstrap[445]: Time 0.204026 seconds, bootstrap likelihood -2827.367424, best rearrangement setting 9 Bootstrap[446]: Time 0.203249 seconds, bootstrap likelihood -2756.421908, best rearrangement setting 13 Bootstrap[447]: Time 0.218665 seconds, bootstrap likelihood -2687.014704, best rearrangement setting 10 Bootstrap[448]: Time 0.113084 seconds, bootstrap likelihood -2704.547270, best rearrangement setting 15 Bootstrap[449]: Time 0.155836 seconds, bootstrap likelihood -2613.767761, best rearrangement setting 9 Bootstrap[450]: Time 0.076070 seconds, bootstrap likelihood -2727.369229, best rearrangement setting 8 Bootstrap[451]: Time 0.105338 seconds, bootstrap likelihood -2684.794373, best rearrangement setting 9 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[452]: Time 0.205450 seconds, bootstrap likelihood -2609.596064, best rearrangement setting 7 Bootstrap[453]: Time 0.217647 seconds, bootstrap likelihood -2736.019777, best rearrangement setting 12 Bootstrap[454]: Time 0.251741 seconds, bootstrap likelihood -2677.395733, best rearrangement setting 14 Bootstrap[455]: Time 0.235187 seconds, bootstrap likelihood -2648.975464, best rearrangement setting 5 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[456]: Time 0.223370 seconds, bootstrap likelihood -2685.798443, best rearrangement setting 5 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[457]: Time 0.225891 seconds, bootstrap likelihood -2655.245569, best rearrangement setting 14 Bootstrap[458]: Time 0.201830 seconds, bootstrap likelihood -2722.903404, best rearrangement setting 13 Bootstrap[459]: Time 0.260810 seconds, bootstrap likelihood -2682.304254, best rearrangement setting 13 Bootstrap[460]: Time 0.095309 seconds, bootstrap likelihood -2809.479484, best rearrangement setting 14 Bootstrap[461]: Time 0.202762 seconds, bootstrap likelihood -2602.331586, best rearrangement setting 8 Bootstrap[462]: Time 0.181756 seconds, bootstrap likelihood -2664.095119, best rearrangement setting 8 Bootstrap[463]: Time 0.204489 seconds, bootstrap likelihood -2699.931429, best rearrangement setting 9 Bootstrap[464]: Time 0.083482 seconds, bootstrap likelihood -2540.973573, best rearrangement setting 5 Bootstrap[465]: Time 0.095708 seconds, bootstrap likelihood -2869.410966, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[466]: Time 0.192702 seconds, bootstrap likelihood -2549.607330, best rearrangement setting 9 Bootstrap[467]: Time 0.326403 seconds, bootstrap likelihood -2674.733113, best rearrangement setting 8 Bootstrap[468]: Time 0.202956 seconds, bootstrap likelihood -2672.404497, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[469]: Time 0.230772 seconds, bootstrap likelihood -2764.057964, best rearrangement setting 9 Bootstrap[470]: Time 0.179133 seconds, bootstrap likelihood -2639.197330, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[471]: Time 0.321885 seconds, bootstrap likelihood -2649.933784, best rearrangement setting 14 Bootstrap[472]: Time 0.200318 seconds, bootstrap likelihood -2736.251919, best rearrangement setting 12 Bootstrap[473]: Time 0.171736 seconds, bootstrap likelihood -2645.002888, best rearrangement setting 7 Bootstrap[474]: Time 0.278375 seconds, bootstrap likelihood -2666.079964, best rearrangement setting 6 Bootstrap[475]: Time 0.241565 seconds, bootstrap likelihood -2761.543054, best rearrangement setting 7 Bootstrap[476]: Time 0.159831 seconds, bootstrap likelihood -2579.932080, best rearrangement setting 15 Bootstrap[477]: Time 0.260096 seconds, bootstrap likelihood -2732.389483, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[478]: Time 0.300476 seconds, bootstrap likelihood -2538.609746, best rearrangement setting 12 Bootstrap[479]: Time 0.219870 seconds, bootstrap likelihood -2698.119795, best rearrangement setting 9 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[480]: Time 0.248323 seconds, bootstrap likelihood -2646.411620, best rearrangement setting 5 Bootstrap[481]: Time 0.198338 seconds, bootstrap likelihood -2740.879993, best rearrangement setting 9 Bootstrap[482]: Time 0.091104 seconds, bootstrap likelihood -2716.175757, best rearrangement setting 6 Bootstrap[483]: Time 0.095275 seconds, bootstrap likelihood -2594.538246, best rearrangement setting 14 Bootstrap[484]: Time 0.078083 seconds, bootstrap likelihood -2670.340875, best rearrangement setting 12 Bootstrap[485]: Time 0.089587 seconds, bootstrap likelihood -2626.001792, best rearrangement setting 15 Bootstrap[486]: Time 0.077553 seconds, bootstrap likelihood -2653.578613, best rearrangement setting 6 Bootstrap[487]: Time 0.169787 seconds, bootstrap likelihood -2655.555731, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[488]: Time 0.182965 seconds, bootstrap likelihood -2625.727399, best rearrangement setting 12 Bootstrap[489]: Time 0.213743 seconds, bootstrap likelihood -2780.466193, best rearrangement setting 10 Bootstrap[490]: Time 0.172185 seconds, bootstrap likelihood -2745.777384, best rearrangement setting 6 Bootstrap[491]: Time 0.294149 seconds, bootstrap likelihood -2676.535561, best rearrangement setting 10 Bootstrap[492]: Time 0.175082 seconds, bootstrap likelihood -2672.594131, best rearrangement setting 9 Bootstrap[493]: Time 0.208253 seconds, bootstrap likelihood -2571.508876, best rearrangement setting 11 Bootstrap[494]: Time 0.223934 seconds, bootstrap likelihood -2645.353617, best rearrangement setting 7 Bootstrap[495]: Time 0.223872 seconds, bootstrap likelihood -2703.054067, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[496]: Time 0.264144 seconds, bootstrap likelihood -2605.160645, best rearrangement setting 5 Bootstrap[497]: Time 0.231779 seconds, bootstrap likelihood -2695.183528, best rearrangement setting 12 Bootstrap[498]: Time 0.232372 seconds, bootstrap likelihood -2701.173114, best rearrangement setting 5 Bootstrap[499]: Time 0.102193 seconds, bootstrap likelihood -2743.146766, best rearrangement setting 13 Bootstrap[500]: Time 0.107477 seconds, bootstrap likelihood -2744.564493, best rearrangement setting 15 Bootstrap[501]: Time 0.148089 seconds, bootstrap likelihood -2665.496984, best rearrangement setting 15 Bootstrap[502]: Time 0.256771 seconds, bootstrap likelihood -2740.397386, best rearrangement setting 7 Bootstrap[503]: Time 0.096868 seconds, bootstrap likelihood -2642.535481, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[504]: Time 0.236125 seconds, bootstrap likelihood -2733.764361, best rearrangement setting 14 Bootstrap[505]: Time 0.214568 seconds, bootstrap likelihood -2624.069024, best rearrangement setting 14 Bootstrap[506]: Time 0.217605 seconds, bootstrap likelihood -2566.430681, best rearrangement setting 13 Bootstrap[507]: Time 0.196777 seconds, bootstrap likelihood -2595.407860, best rearrangement setting 10 Bootstrap[508]: Time 0.094110 seconds, bootstrap likelihood -2689.232167, best rearrangement setting 6 Bootstrap[509]: Time 0.244992 seconds, bootstrap likelihood -2658.758894, best rearrangement setting 12 Bootstrap[510]: Time 0.225228 seconds, bootstrap likelihood -2683.477042, best rearrangement setting 15 Bootstrap[511]: Time 0.089813 seconds, bootstrap likelihood -2665.025523, best rearrangement setting 13 Bootstrap[512]: Time 0.112508 seconds, bootstrap likelihood -2576.791748, best rearrangement setting 11 Bootstrap[513]: Time 0.088441 seconds, bootstrap likelihood -2691.015410, best rearrangement setting 15 Bootstrap[514]: Time 0.127261 seconds, bootstrap likelihood -2608.155970, best rearrangement setting 5 Bootstrap[515]: Time 0.121687 seconds, bootstrap likelihood -2679.036914, best rearrangement setting 13 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[516]: Time 0.185364 seconds, bootstrap likelihood -2743.694005, best rearrangement setting 10 Bootstrap[517]: Time 0.223996 seconds, bootstrap likelihood -2672.796999, best rearrangement setting 11 Bootstrap[518]: Time 0.173543 seconds, bootstrap likelihood -2615.615450, best rearrangement setting 6 Bootstrap[519]: Time 0.180145 seconds, bootstrap likelihood -2745.182185, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[520]: Time 0.233380 seconds, bootstrap likelihood -2623.149637, best rearrangement setting 5 Bootstrap[521]: Time 0.190222 seconds, bootstrap likelihood -2696.659598, best rearrangement setting 6 Bootstrap[522]: Time 0.267547 seconds, bootstrap likelihood -2666.819848, best rearrangement setting 12 Bootstrap[523]: Time 0.197581 seconds, bootstrap likelihood -2664.744058, best rearrangement setting 13 Bootstrap[524]: Time 0.103121 seconds, bootstrap likelihood -2644.177559, best rearrangement setting 8 Bootstrap[525]: Time 0.201264 seconds, bootstrap likelihood -2611.171253, best rearrangement setting 5 Bootstrap[526]: Time 0.170586 seconds, bootstrap likelihood -2710.705444, best rearrangement setting 9 Bootstrap[527]: Time 0.216109 seconds, bootstrap likelihood -2780.289635, best rearrangement setting 7 Bootstrap[528]: Time 0.228093 seconds, bootstrap likelihood -2700.164715, best rearrangement setting 7 Bootstrap[529]: Time 0.317594 seconds, bootstrap likelihood -2699.735026, best rearrangement setting 7 Bootstrap[530]: Time 0.112503 seconds, bootstrap likelihood -2553.059849, best rearrangement setting 8 Bootstrap[531]: Time 0.186919 seconds, bootstrap likelihood -2706.708225, best rearrangement setting 7 Bootstrap[532]: Time 0.167280 seconds, bootstrap likelihood -2714.007958, best rearrangement setting 10 Bootstrap[533]: Time 0.167648 seconds, bootstrap likelihood -2715.079952, best rearrangement setting 8 Bootstrap[534]: Time 0.183052 seconds, bootstrap likelihood -2759.282554, best rearrangement setting 11 Bootstrap[535]: Time 0.217585 seconds, bootstrap likelihood -2533.136482, best rearrangement setting 10 Bootstrap[536]: Time 0.220914 seconds, bootstrap likelihood -2834.642131, best rearrangement setting 9 Bootstrap[537]: Time 0.140118 seconds, bootstrap likelihood -2590.952419, best rearrangement setting 14 Bootstrap[538]: Time 0.098763 seconds, bootstrap likelihood -2631.446932, best rearrangement setting 9 Bootstrap[539]: Time 0.194971 seconds, bootstrap likelihood -2582.191814, best rearrangement setting 15 Bootstrap[540]: Time 0.087409 seconds, bootstrap likelihood -2659.249296, best rearrangement setting 11 Bootstrap[541]: Time 0.100135 seconds, bootstrap likelihood -2728.125055, best rearrangement setting 13 Bootstrap[542]: Time 0.166457 seconds, bootstrap likelihood -2522.195821, best rearrangement setting 12 Bootstrap[543]: Time 0.281318 seconds, bootstrap likelihood -2583.523365, best rearrangement setting 7 Bootstrap[544]: Time 0.215183 seconds, bootstrap likelihood -2812.522971, best rearrangement setting 15 Bootstrap[545]: Time 0.181901 seconds, bootstrap likelihood -2694.525782, best rearrangement setting 13 Bootstrap[546]: Time 0.207657 seconds, bootstrap likelihood -2655.425287, best rearrangement setting 10 Bootstrap[547]: Time 0.152851 seconds, bootstrap likelihood -2542.070131, best rearrangement setting 8 Bootstrap[548]: Time 0.204492 seconds, bootstrap likelihood -2749.403326, best rearrangement setting 10 Bootstrap[549]: Time 0.214349 seconds, bootstrap likelihood -2634.468494, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[550]: Time 0.232058 seconds, bootstrap likelihood -2616.715131, best rearrangement setting 8 Bootstrap[551]: Time 0.235308 seconds, bootstrap likelihood -2587.266013, best rearrangement setting 14 Bootstrap[552]: Time 0.173657 seconds, bootstrap likelihood -2664.043804, best rearrangement setting 8 Bootstrap[553]: Time 0.165787 seconds, bootstrap likelihood -2561.745975, best rearrangement setting 5 Bootstrap[554]: Time 0.074804 seconds, bootstrap likelihood -2710.566723, best rearrangement setting 6 Bootstrap[555]: Time 0.119229 seconds, bootstrap likelihood -2650.415471, best rearrangement setting 14 Bootstrap[556]: Time 0.098013 seconds, bootstrap likelihood -2707.291455, best rearrangement setting 8 Bootstrap[557]: Time 0.242585 seconds, bootstrap likelihood -2659.359664, best rearrangement setting 11 Bootstrap[558]: Time 0.112410 seconds, bootstrap likelihood -2738.213930, best rearrangement setting 10 Bootstrap[559]: Time 0.230146 seconds, bootstrap likelihood -2564.277457, best rearrangement setting 12 Bootstrap[560]: Time 0.204266 seconds, bootstrap likelihood -2604.083014, best rearrangement setting 12 Bootstrap[561]: Time 0.348416 seconds, bootstrap likelihood -2682.369539, best rearrangement setting 13 Bootstrap[562]: Time 0.182797 seconds, bootstrap likelihood -2622.092545, best rearrangement setting 8 Bootstrap[563]: Time 0.217382 seconds, bootstrap likelihood -2725.608429, best rearrangement setting 14 Bootstrap[564]: Time 0.247361 seconds, bootstrap likelihood -2679.507530, best rearrangement setting 11 Bootstrap[565]: Time 0.146945 seconds, bootstrap likelihood -2561.708380, best rearrangement setting 15 Bootstrap[566]: Time 0.239954 seconds, bootstrap likelihood -2627.308535, best rearrangement setting 6 Bootstrap[567]: Time 0.156900 seconds, bootstrap likelihood -2721.704920, best rearrangement setting 11 Bootstrap[568]: Time 0.192862 seconds, bootstrap likelihood -2555.677386, best rearrangement setting 7 Bootstrap[569]: Time 0.177999 seconds, bootstrap likelihood -2566.218583, best rearrangement setting 12 Bootstrap[570]: Time 0.182404 seconds, bootstrap likelihood -2667.423836, best rearrangement setting 7 Bootstrap[571]: Time 0.181273 seconds, bootstrap likelihood -2640.533091, best rearrangement setting 13 Bootstrap[572]: Time 0.240035 seconds, bootstrap likelihood -2742.484168, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[573]: Time 0.224683 seconds, bootstrap likelihood -2647.175955, best rearrangement setting 11 Bootstrap[574]: Time 0.196054 seconds, bootstrap likelihood -2775.708470, best rearrangement setting 5 Bootstrap[575]: Time 0.168809 seconds, bootstrap likelihood -2615.217938, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[576]: Time 0.171110 seconds, bootstrap likelihood -2652.150612, best rearrangement setting 13 Bootstrap[577]: Time 0.266353 seconds, bootstrap likelihood -2663.128002, best rearrangement setting 14 Bootstrap[578]: Time 0.207225 seconds, bootstrap likelihood -2693.914532, best rearrangement setting 6 Bootstrap[579]: Time 0.147362 seconds, bootstrap likelihood -2679.237657, best rearrangement setting 11 Bootstrap[580]: Time 0.213534 seconds, bootstrap likelihood -2701.498886, best rearrangement setting 15 Bootstrap[581]: Time 0.182513 seconds, bootstrap likelihood -2721.943859, best rearrangement setting 13 Bootstrap[582]: Time 0.185647 seconds, bootstrap likelihood -2686.632499, best rearrangement setting 5 Bootstrap[583]: Time 0.196659 seconds, bootstrap likelihood -2567.619314, best rearrangement setting 15 Bootstrap[584]: Time 0.187411 seconds, bootstrap likelihood -2808.329814, best rearrangement setting 14 Bootstrap[585]: Time 0.118984 seconds, bootstrap likelihood -2796.348783, best rearrangement setting 15 Bootstrap[586]: Time 0.118517 seconds, bootstrap likelihood -2698.355328, best rearrangement setting 10 Bootstrap[587]: Time 0.167718 seconds, bootstrap likelihood -2735.882715, best rearrangement setting 15 Bootstrap[588]: Time 0.207438 seconds, bootstrap likelihood -2694.647419, best rearrangement setting 10 Bootstrap[589]: Time 0.206610 seconds, bootstrap likelihood -2542.140633, best rearrangement setting 9 Bootstrap[590]: Time 0.085319 seconds, bootstrap likelihood -2757.893785, best rearrangement setting 7 Bootstrap[591]: Time 0.091566 seconds, bootstrap likelihood -2771.563934, best rearrangement setting 13 Bootstrap[592]: Time 0.170206 seconds, bootstrap likelihood -2712.995582, best rearrangement setting 11 Bootstrap[593]: Time 0.204488 seconds, bootstrap likelihood -2579.560719, best rearrangement setting 10 Bootstrap[594]: Time 0.136921 seconds, bootstrap likelihood -2667.158103, best rearrangement setting 7 Bootstrap[595]: Time 0.206069 seconds, bootstrap likelihood -2771.132698, best rearrangement setting 15 Bootstrap[596]: Time 0.108857 seconds, bootstrap likelihood -2608.077078, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[597]: Time 0.211316 seconds, bootstrap likelihood -2623.864338, best rearrangement setting 10 Bootstrap[598]: Time 0.187722 seconds, bootstrap likelihood -2609.761897, best rearrangement setting 5 Bootstrap[599]: Time 0.081129 seconds, bootstrap likelihood -2684.957873, best rearrangement setting 13 Bootstrap[600]: Time 0.194449 seconds, bootstrap likelihood -2730.751051, best rearrangement setting 8 Bootstrap[601]: Time 0.253313 seconds, bootstrap likelihood -2639.037451, best rearrangement setting 5 Bootstrap[602]: Time 0.176142 seconds, bootstrap likelihood -2706.185716, best rearrangement setting 14 Bootstrap[603]: Time 0.255284 seconds, bootstrap likelihood -2734.133101, best rearrangement setting 7 Bootstrap[604]: Time 0.248205 seconds, bootstrap likelihood -2621.407464, best rearrangement setting 11 Bootstrap[605]: Time 0.287330 seconds, bootstrap likelihood -2712.065478, best rearrangement setting 11 Bootstrap[606]: Time 0.184174 seconds, bootstrap likelihood -2689.383923, best rearrangement setting 10 Bootstrap[607]: Time 0.153801 seconds, bootstrap likelihood -2599.755631, best rearrangement setting 13 Bootstrap[608]: Time 0.180195 seconds, bootstrap likelihood -2732.515071, best rearrangement setting 15 Bootstrap[609]: Time 0.221641 seconds, bootstrap likelihood -2753.784131, best rearrangement setting 11 Bootstrap[610]: Time 0.221951 seconds, bootstrap likelihood -2625.881636, best rearrangement setting 12 Bootstrap[611]: Time 0.207614 seconds, bootstrap likelihood -2745.681451, best rearrangement setting 7 Bootstrap[612]: Time 0.278759 seconds, bootstrap likelihood -2737.397564, best rearrangement setting 11 Bootstrap[613]: Time 0.208971 seconds, bootstrap likelihood -2769.749864, best rearrangement setting 12 Bootstrap[614]: Time 0.174504 seconds, bootstrap likelihood -2669.385706, best rearrangement setting 7 Bootstrap[615]: Time 0.206146 seconds, bootstrap likelihood -2669.033134, best rearrangement setting 7 Bootstrap[616]: Time 0.254143 seconds, bootstrap likelihood -2748.783662, best rearrangement setting 10 Bootstrap[617]: Time 0.201013 seconds, bootstrap likelihood -2683.876168, best rearrangement setting 12 Bootstrap[618]: Time 0.085670 seconds, bootstrap likelihood -2769.231872, best rearrangement setting 14 Bootstrap[619]: Time 0.097010 seconds, bootstrap likelihood -2800.772748, best rearrangement setting 11 Bootstrap[620]: Time 0.091228 seconds, bootstrap likelihood -2669.571454, best rearrangement setting 7 Bootstrap[621]: Time 0.210512 seconds, bootstrap likelihood -2654.055755, best rearrangement setting 13 Bootstrap[622]: Time 0.211308 seconds, bootstrap likelihood -2610.453891, best rearrangement setting 13 Bootstrap[623]: Time 0.203756 seconds, bootstrap likelihood -2733.875439, best rearrangement setting 15 Bootstrap[624]: Time 0.311909 seconds, bootstrap likelihood -2653.369279, best rearrangement setting 10 Bootstrap[625]: Time 0.288014 seconds, bootstrap likelihood -2721.459581, best rearrangement setting 15 Bootstrap[626]: Time 0.321731 seconds, bootstrap likelihood -2605.104591, best rearrangement setting 11 Bootstrap[627]: Time 0.167787 seconds, bootstrap likelihood -2542.414643, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[628]: Time 0.258752 seconds, bootstrap likelihood -2660.034610, best rearrangement setting 14 Bootstrap[629]: Time 0.192697 seconds, bootstrap likelihood -2775.485042, best rearrangement setting 5 Bootstrap[630]: Time 0.090706 seconds, bootstrap likelihood -2616.458297, best rearrangement setting 13 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[631]: Time 0.204034 seconds, bootstrap likelihood -2768.568685, best rearrangement setting 8 Bootstrap[632]: Time 0.247307 seconds, bootstrap likelihood -2662.603801, best rearrangement setting 15 Bootstrap[633]: Time 0.181728 seconds, bootstrap likelihood -2621.454927, best rearrangement setting 6 Bootstrap[634]: Time 0.244761 seconds, bootstrap likelihood -2752.170691, best rearrangement setting 7 Bootstrap[635]: Time 0.221873 seconds, bootstrap likelihood -2661.033259, best rearrangement setting 7 Bootstrap[636]: Time 0.217780 seconds, bootstrap likelihood -2709.301595, best rearrangement setting 14 Bootstrap[637]: Time 0.088603 seconds, bootstrap likelihood -2712.315438, best rearrangement setting 7 Bootstrap[638]: Time 0.107898 seconds, bootstrap likelihood -2755.941518, best rearrangement setting 13 Bootstrap[639]: Time 0.251173 seconds, bootstrap likelihood -2657.071652, best rearrangement setting 11 Bootstrap[640]: Time 0.218733 seconds, bootstrap likelihood -2720.838530, best rearrangement setting 10 Bootstrap[641]: Time 0.190552 seconds, bootstrap likelihood -2572.246081, best rearrangement setting 10 Bootstrap[642]: Time 0.193671 seconds, bootstrap likelihood -2580.485379, best rearrangement setting 10 Bootstrap[643]: Time 0.122790 seconds, bootstrap likelihood -2761.408790, best rearrangement setting 14 Bootstrap[644]: Time 0.229338 seconds, bootstrap likelihood -2683.634068, best rearrangement setting 15 Bootstrap[645]: Time 0.299184 seconds, bootstrap likelihood -2723.132686, best rearrangement setting 14 Bootstrap[646]: Time 0.212909 seconds, bootstrap likelihood -2675.880294, best rearrangement setting 14 Bootstrap[647]: Time 0.182050 seconds, bootstrap likelihood -2583.733391, best rearrangement setting 7 Bootstrap[648]: Time 0.223671 seconds, bootstrap likelihood -2598.362874, best rearrangement setting 6 Bootstrap[649]: Time 0.243981 seconds, bootstrap likelihood -2621.865410, best rearrangement setting 8 Bootstrap[650]: Time 0.130538 seconds, bootstrap likelihood -2730.663509, best rearrangement setting 14 Bootstrap[651]: Time 0.205795 seconds, bootstrap likelihood -2729.449254, best rearrangement setting 12 Bootstrap[652]: Time 0.240073 seconds, bootstrap likelihood -2596.273234, best rearrangement setting 7 Bootstrap[653]: Time 0.168785 seconds, bootstrap likelihood -2744.798794, best rearrangement setting 9 Bootstrap[654]: Time 0.168336 seconds, bootstrap likelihood -2669.993158, best rearrangement setting 10 Bootstrap[655]: Time 0.103951 seconds, bootstrap likelihood -2642.332215, best rearrangement setting 12 Bootstrap[656]: Time 0.166703 seconds, bootstrap likelihood -2686.513715, best rearrangement setting 5 Bootstrap[657]: Time 0.210883 seconds, bootstrap likelihood -2684.683341, best rearrangement setting 11 Bootstrap[658]: Time 0.242734 seconds, bootstrap likelihood -2717.500112, best rearrangement setting 6 Bootstrap[659]: Time 0.202170 seconds, bootstrap likelihood -2636.521758, best rearrangement setting 10 Bootstrap[660]: Time 0.187010 seconds, bootstrap likelihood -2643.894306, best rearrangement setting 12 Bootstrap[661]: Time 0.226578 seconds, bootstrap likelihood -2634.657460, best rearrangement setting 12 Bootstrap[662]: Time 0.180061 seconds, bootstrap likelihood -2675.992266, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[663]: Time 0.264420 seconds, bootstrap likelihood -2705.607032, best rearrangement setting 5 Bootstrap[664]: Time 0.199892 seconds, bootstrap likelihood -2698.456637, best rearrangement setting 13 Bootstrap[665]: Time 0.089232 seconds, bootstrap likelihood -2714.073031, best rearrangement setting 15 Bootstrap[666]: Time 0.127415 seconds, bootstrap likelihood -2646.157750, best rearrangement setting 7 Bootstrap[667]: Time 0.089212 seconds, bootstrap likelihood -2610.018150, best rearrangement setting 11 Bootstrap[668]: Time 0.215548 seconds, bootstrap likelihood -2637.059455, best rearrangement setting 12 Bootstrap[669]: Time 0.184831 seconds, bootstrap likelihood -2757.543691, best rearrangement setting 8 Bootstrap[670]: Time 0.103601 seconds, bootstrap likelihood -2561.347240, best rearrangement setting 14 Bootstrap[671]: Time 0.090217 seconds, bootstrap likelihood -2778.197433, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[672]: Time 0.226045 seconds, bootstrap likelihood -2699.789843, best rearrangement setting 14 Bootstrap[673]: Time 0.214493 seconds, bootstrap likelihood -2680.935652, best rearrangement setting 9 Bootstrap[674]: Time 0.288611 seconds, bootstrap likelihood -2546.712341, best rearrangement setting 14 Bootstrap[675]: Time 0.260566 seconds, bootstrap likelihood -2628.368907, best rearrangement setting 10 Bootstrap[676]: Time 0.275833 seconds, bootstrap likelihood -2697.191462, best rearrangement setting 6 Bootstrap[677]: Time 0.239972 seconds, bootstrap likelihood -2682.388335, best rearrangement setting 11 Bootstrap[678]: Time 0.357451 seconds, bootstrap likelihood -2731.973903, best rearrangement setting 7 Bootstrap[679]: Time 0.145776 seconds, bootstrap likelihood -2658.795618, best rearrangement setting 13 Bootstrap[680]: Time 0.098956 seconds, bootstrap likelihood -2681.994313, best rearrangement setting 14 Bootstrap[681]: Time 0.109897 seconds, bootstrap likelihood -2733.011274, best rearrangement setting 7 Bootstrap[682]: Time 0.179219 seconds, bootstrap likelihood -2726.325137, best rearrangement setting 5 Bootstrap[683]: Time 0.205348 seconds, bootstrap likelihood -2714.924479, best rearrangement setting 6 Bootstrap[684]: Time 0.120473 seconds, bootstrap likelihood -2633.792222, best rearrangement setting 6 Bootstrap[685]: Time 0.208336 seconds, bootstrap likelihood -2663.617077, best rearrangement setting 6 Bootstrap[686]: Time 0.145783 seconds, bootstrap likelihood -2565.716637, best rearrangement setting 5 Bootstrap[687]: Time 0.104040 seconds, bootstrap likelihood -2582.343077, best rearrangement setting 15 Bootstrap[688]: Time 0.290343 seconds, bootstrap likelihood -2612.839953, best rearrangement setting 8 Bootstrap[689]: Time 0.273022 seconds, bootstrap likelihood -2698.210208, best rearrangement setting 10 Bootstrap[690]: Time 0.183286 seconds, bootstrap likelihood -2686.219904, best rearrangement setting 14 Bootstrap[691]: Time 0.250954 seconds, bootstrap likelihood -2685.646144, best rearrangement setting 14 Bootstrap[692]: Time 0.189642 seconds, bootstrap likelihood -2633.427126, best rearrangement setting 6 Bootstrap[693]: Time 0.121248 seconds, bootstrap likelihood -2666.436858, best rearrangement setting 14 Bootstrap[694]: Time 0.101867 seconds, bootstrap likelihood -2564.064463, best rearrangement setting 9 Bootstrap[695]: Time 0.087376 seconds, bootstrap likelihood -2735.068126, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[696]: Time 0.219176 seconds, bootstrap likelihood -2605.113829, best rearrangement setting 11 Bootstrap[697]: Time 0.248535 seconds, bootstrap likelihood -2711.742801, best rearrangement setting 5 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[698]: Time 0.320817 seconds, bootstrap likelihood -2682.804216, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[699]: Time 0.283485 seconds, bootstrap likelihood -2668.350420, best rearrangement setting 11 Bootstrap[700]: Time 0.088225 seconds, bootstrap likelihood -2638.047818, best rearrangement setting 12 Bootstrap[701]: Time 0.105104 seconds, bootstrap likelihood -2715.918171, best rearrangement setting 13 Bootstrap[702]: Time 0.217295 seconds, bootstrap likelihood -2598.076702, best rearrangement setting 15 Bootstrap[703]: Time 0.109450 seconds, bootstrap likelihood -2721.310531, best rearrangement setting 11 Bootstrap[704]: Time 0.116765 seconds, bootstrap likelihood -2691.151478, best rearrangement setting 11 Bootstrap[705]: Time 0.207463 seconds, bootstrap likelihood -2699.698519, best rearrangement setting 9 Bootstrap[706]: Time 0.221581 seconds, bootstrap likelihood -2663.611795, best rearrangement setting 8 Bootstrap[707]: Time 0.205333 seconds, bootstrap likelihood -2687.589950, best rearrangement setting 10 Bootstrap[708]: Time 0.277997 seconds, bootstrap likelihood -2636.378148, best rearrangement setting 10 Bootstrap[709]: Time 0.241079 seconds, bootstrap likelihood -2650.174733, best rearrangement setting 10 Bootstrap[710]: Time 0.256388 seconds, bootstrap likelihood -2776.938941, best rearrangement setting 15 Bootstrap[711]: Time 0.271838 seconds, bootstrap likelihood -2798.733663, best rearrangement setting 13 Bootstrap[712]: Time 0.111922 seconds, bootstrap likelihood -2602.907824, best rearrangement setting 7 Bootstrap[713]: Time 0.233228 seconds, bootstrap likelihood -2743.034620, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[714]: Time 0.220683 seconds, bootstrap likelihood -2737.726810, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[715]: Time 0.199574 seconds, bootstrap likelihood -2538.994444, best rearrangement setting 10 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[716]: Time 0.133915 seconds, bootstrap likelihood -2721.831141, best rearrangement setting 5 Bootstrap[717]: Time 0.192342 seconds, bootstrap likelihood -2637.214286, best rearrangement setting 6 Bootstrap[718]: Time 0.297290 seconds, bootstrap likelihood -2662.715248, best rearrangement setting 6 Bootstrap[719]: Time 0.206064 seconds, bootstrap likelihood -2570.556807, best rearrangement setting 14 Bootstrap[720]: Time 0.254586 seconds, bootstrap likelihood -2562.144376, best rearrangement setting 10 Bootstrap[721]: Time 0.231677 seconds, bootstrap likelihood -2716.284525, best rearrangement setting 13 Bootstrap[722]: Time 0.221383 seconds, bootstrap likelihood -2740.347642, best rearrangement setting 6 Bootstrap[723]: Time 0.195071 seconds, bootstrap likelihood -2851.789019, best rearrangement setting 13 Bootstrap[724]: Time 0.094227 seconds, bootstrap likelihood -2652.734938, best rearrangement setting 5 Bootstrap[725]: Time 0.091955 seconds, bootstrap likelihood -2574.284469, best rearrangement setting 9 Bootstrap[726]: Time 0.113295 seconds, bootstrap likelihood -2632.148898, best rearrangement setting 9 Bootstrap[727]: Time 0.083030 seconds, bootstrap likelihood -2755.257591, best rearrangement setting 9 Bootstrap[728]: Time 0.170191 seconds, bootstrap likelihood -2721.331359, best rearrangement setting 8 Bootstrap[729]: Time 0.226172 seconds, bootstrap likelihood -2656.805109, best rearrangement setting 7 Bootstrap[730]: Time 0.097196 seconds, bootstrap likelihood -2648.992574, best rearrangement setting 15 Bootstrap[731]: Time 0.203293 seconds, bootstrap likelihood -2662.773559, best rearrangement setting 11 Bootstrap[732]: Time 0.176682 seconds, bootstrap likelihood -2670.302456, best rearrangement setting 10 Bootstrap[733]: Time 0.132718 seconds, bootstrap likelihood -2594.145040, best rearrangement setting 15 Bootstrap[734]: Time 0.070515 seconds, bootstrap likelihood -2572.896309, best rearrangement setting 11 Bootstrap[735]: Time 0.083995 seconds, bootstrap likelihood -2699.343118, best rearrangement setting 6 Bootstrap[736]: Time 0.100009 seconds, bootstrap likelihood -2699.884772, best rearrangement setting 11 Bootstrap[737]: Time 0.157672 seconds, bootstrap likelihood -2687.945851, best rearrangement setting 11 Bootstrap[738]: Time 0.098972 seconds, bootstrap likelihood -2631.186838, best rearrangement setting 15 Bootstrap[739]: Time 0.074780 seconds, bootstrap likelihood -2627.567506, best rearrangement setting 7 Bootstrap[740]: Time 0.081359 seconds, bootstrap likelihood -2578.326426, best rearrangement setting 10 Bootstrap[741]: Time 0.193123 seconds, bootstrap likelihood -2772.363197, best rearrangement setting 9 Bootstrap[742]: Time 0.307901 seconds, bootstrap likelihood -2605.562669, best rearrangement setting 12 Bootstrap[743]: Time 0.110900 seconds, bootstrap likelihood -2662.125892, best rearrangement setting 12 Bootstrap[744]: Time 0.104993 seconds, bootstrap likelihood -2710.019375, best rearrangement setting 13 Bootstrap[745]: Time 0.136665 seconds, bootstrap likelihood -2634.708647, best rearrangement setting 10 Bootstrap[746]: Time 0.177300 seconds, bootstrap likelihood -2812.635013, best rearrangement setting 5 Bootstrap[747]: Time 0.125158 seconds, bootstrap likelihood -2724.866943, best rearrangement setting 5 Bootstrap[748]: Time 0.101447 seconds, bootstrap likelihood -2627.137301, best rearrangement setting 10 Bootstrap[749]: Time 0.209309 seconds, bootstrap likelihood -2739.344484, best rearrangement setting 14 Bootstrap[750]: Time 0.200476 seconds, bootstrap likelihood -2751.192541, best rearrangement setting 5 Bootstrap[751]: Time 0.220944 seconds, bootstrap likelihood -2683.196393, best rearrangement setting 11 Bootstrap[752]: Time 0.097449 seconds, bootstrap likelihood -2763.821265, best rearrangement setting 6 Bootstrap[753]: Time 0.229789 seconds, bootstrap likelihood -2691.773473, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[754]: Time 0.235703 seconds, bootstrap likelihood -2594.156752, best rearrangement setting 8 Bootstrap[755]: Time 0.258435 seconds, bootstrap likelihood -2726.100682, best rearrangement setting 14 Bootstrap[756]: Time 0.156123 seconds, bootstrap likelihood -2665.041702, best rearrangement setting 11 Bootstrap[757]: Time 0.139571 seconds, bootstrap likelihood -2533.797264, best rearrangement setting 7 Bootstrap[758]: Time 0.256800 seconds, bootstrap likelihood -2658.509592, best rearrangement setting 9 Bootstrap[759]: Time 0.330197 seconds, bootstrap likelihood -2660.439430, best rearrangement setting 13 Bootstrap[760]: Time 0.107764 seconds, bootstrap likelihood -2634.915768, best rearrangement setting 9 Bootstrap[761]: Time 0.088168 seconds, bootstrap likelihood -2667.104183, best rearrangement setting 9 Bootstrap[762]: Time 0.084009 seconds, bootstrap likelihood -2742.445067, best rearrangement setting 5 Bootstrap[763]: Time 0.104177 seconds, bootstrap likelihood -2568.892713, best rearrangement setting 8 Bootstrap[764]: Time 0.101174 seconds, bootstrap likelihood -2683.855592, best rearrangement setting 6 Bootstrap[765]: Time 0.209799 seconds, bootstrap likelihood -2723.966429, best rearrangement setting 9 Bootstrap[766]: Time 0.215648 seconds, bootstrap likelihood -2633.353621, best rearrangement setting 10 Bootstrap[767]: Time 0.105249 seconds, bootstrap likelihood -2651.584933, best rearrangement setting 14 Bootstrap[768]: Time 0.208096 seconds, bootstrap likelihood -2644.362424, best rearrangement setting 5 Bootstrap[769]: Time 0.239081 seconds, bootstrap likelihood -2674.040897, best rearrangement setting 13 Bootstrap[770]: Time 0.211317 seconds, bootstrap likelihood -2595.529126, best rearrangement setting 13 Bootstrap[771]: Time 0.205798 seconds, bootstrap likelihood -2594.205930, best rearrangement setting 11 Bootstrap[772]: Time 0.097445 seconds, bootstrap likelihood -2672.004193, best rearrangement setting 15 Bootstrap[773]: Time 0.103799 seconds, bootstrap likelihood -2684.622787, best rearrangement setting 8 Bootstrap[774]: Time 0.076672 seconds, bootstrap likelihood -2662.636908, best rearrangement setting 11 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[775]: Time 0.188615 seconds, bootstrap likelihood -2706.302036, best rearrangement setting 14 Bootstrap[776]: Time 0.224942 seconds, bootstrap likelihood -2697.338093, best rearrangement setting 10 Bootstrap[777]: Time 0.213855 seconds, bootstrap likelihood -2616.411639, best rearrangement setting 15 Bootstrap[778]: Time 0.223014 seconds, bootstrap likelihood -2816.191218, best rearrangement setting 10 Bootstrap[779]: Time 0.243628 seconds, bootstrap likelihood -2578.936748, best rearrangement setting 14 Bootstrap[780]: Time 0.231038 seconds, bootstrap likelihood -2640.827854, best rearrangement setting 14 Bootstrap[781]: Time 0.136818 seconds, bootstrap likelihood -2595.486632, best rearrangement setting 14 Bootstrap[782]: Time 0.216657 seconds, bootstrap likelihood -2669.015029, best rearrangement setting 15 Bootstrap[783]: Time 0.239350 seconds, bootstrap likelihood -2629.889393, best rearrangement setting 15 Bootstrap[784]: Time 0.260084 seconds, bootstrap likelihood -2658.914839, best rearrangement setting 15 Bootstrap[785]: Time 0.124756 seconds, bootstrap likelihood -2736.525012, best rearrangement setting 10 Bootstrap[786]: Time 0.161402 seconds, bootstrap likelihood -2698.191718, best rearrangement setting 8 Bootstrap[787]: Time 0.311457 seconds, bootstrap likelihood -2623.941650, best rearrangement setting 15 Bootstrap[788]: Time 0.208185 seconds, bootstrap likelihood -2647.958367, best rearrangement setting 7 Bootstrap[789]: Time 0.188120 seconds, bootstrap likelihood -2743.989813, best rearrangement setting 10 Bootstrap[790]: Time 0.102830 seconds, bootstrap likelihood -2577.406665, best rearrangement setting 5 Bootstrap[791]: Time 0.078022 seconds, bootstrap likelihood -2660.664586, best rearrangement setting 7 Bootstrap[792]: Time 0.093872 seconds, bootstrap likelihood -2822.159969, best rearrangement setting 9 Bootstrap[793]: Time 0.169032 seconds, bootstrap likelihood -2608.479862, best rearrangement setting 14 Bootstrap[794]: Time 0.176241 seconds, bootstrap likelihood -2749.887574, best rearrangement setting 11 Bootstrap[795]: Time 0.186327 seconds, bootstrap likelihood -2654.350590, best rearrangement setting 12 Bootstrap[796]: Time 0.311853 seconds, bootstrap likelihood -2695.557204, best rearrangement setting 13 Bootstrap[797]: Time 0.225729 seconds, bootstrap likelihood -2770.673465, best rearrangement setting 13 Bootstrap[798]: Time 0.211501 seconds, bootstrap likelihood -2619.683600, best rearrangement setting 11 Bootstrap[799]: Time 0.079378 seconds, bootstrap likelihood -2627.600435, best rearrangement setting 9 Bootstrap[800]: Time 0.195669 seconds, bootstrap likelihood -2637.338662, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[801]: Time 0.245465 seconds, bootstrap likelihood -2617.775988, best rearrangement setting 11 Bootstrap[802]: Time 0.215998 seconds, bootstrap likelihood -2728.920507, best rearrangement setting 6 Bootstrap[803]: Time 0.390744 seconds, bootstrap likelihood -2690.804549, best rearrangement setting 9 Bootstrap[804]: Time 0.191676 seconds, bootstrap likelihood -2645.180051, best rearrangement setting 14 Bootstrap[805]: Time 0.113050 seconds, bootstrap likelihood -2671.290705, best rearrangement setting 12 Bootstrap[806]: Time 0.139827 seconds, bootstrap likelihood -2531.035273, best rearrangement setting 14 Bootstrap[807]: Time 0.273678 seconds, bootstrap likelihood -2643.402962, best rearrangement setting 7 Bootstrap[808]: Time 0.216309 seconds, bootstrap likelihood -2666.732834, best rearrangement setting 12 Bootstrap[809]: Time 0.127440 seconds, bootstrap likelihood -2644.104556, best rearrangement setting 11 Bootstrap[810]: Time 0.085390 seconds, bootstrap likelihood -2718.724031, best rearrangement setting 11 Bootstrap[811]: Time 0.078785 seconds, bootstrap likelihood -2708.823103, best rearrangement setting 14 Bootstrap[812]: Time 0.095844 seconds, bootstrap likelihood -2688.709366, best rearrangement setting 6 Bootstrap[813]: Time 0.123899 seconds, bootstrap likelihood -2683.696182, best rearrangement setting 6 Bootstrap[814]: Time 0.169120 seconds, bootstrap likelihood -2746.108772, best rearrangement setting 10 Bootstrap[815]: Time 0.092887 seconds, bootstrap likelihood -2682.762467, best rearrangement setting 11 Bootstrap[816]: Time 0.213208 seconds, bootstrap likelihood -2648.751957, best rearrangement setting 15 Bootstrap[817]: Time 0.183915 seconds, bootstrap likelihood -2615.166842, best rearrangement setting 10 Bootstrap[818]: Time 0.176533 seconds, bootstrap likelihood -2718.366312, best rearrangement setting 5 Bootstrap[819]: Time 0.210288 seconds, bootstrap likelihood -2631.020967, best rearrangement setting 6 Bootstrap[820]: Time 0.278876 seconds, bootstrap likelihood -2650.150639, best rearrangement setting 9 Bootstrap[821]: Time 0.218798 seconds, bootstrap likelihood -2631.036459, best rearrangement setting 11 Bootstrap[822]: Time 0.259756 seconds, bootstrap likelihood -2648.946929, best rearrangement setting 6 Bootstrap[823]: Time 0.181759 seconds, bootstrap likelihood -2612.565690, best rearrangement setting 15 Bootstrap[824]: Time 0.102017 seconds, bootstrap likelihood -2655.633715, best rearrangement setting 5 Bootstrap[825]: Time 0.100075 seconds, bootstrap likelihood -2687.758077, best rearrangement setting 5 Bootstrap[826]: Time 0.119274 seconds, bootstrap likelihood -2783.942699, best rearrangement setting 5 Bootstrap[827]: Time 0.233112 seconds, bootstrap likelihood -2625.118809, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[828]: Time 0.243319 seconds, bootstrap likelihood -2604.317416, best rearrangement setting 14 Bootstrap[829]: Time 0.260670 seconds, bootstrap likelihood -2599.914309, best rearrangement setting 6 Bootstrap[830]: Time 0.089747 seconds, bootstrap likelihood -2690.885897, best rearrangement setting 7 Bootstrap[831]: Time 0.312536 seconds, bootstrap likelihood -2788.165573, best rearrangement setting 15 Bootstrap[832]: Time 0.176352 seconds, bootstrap likelihood -2598.895844, best rearrangement setting 14 Bootstrap[833]: Time 0.213558 seconds, bootstrap likelihood -2689.667996, best rearrangement setting 6 Bootstrap[834]: Time 0.198706 seconds, bootstrap likelihood -2681.311457, best rearrangement setting 13 Bootstrap[835]: Time 0.094632 seconds, bootstrap likelihood -2647.562797, best rearrangement setting 6 Bootstrap[836]: Time 0.190434 seconds, bootstrap likelihood -2697.298778, best rearrangement setting 9 Bootstrap[837]: Time 0.220289 seconds, bootstrap likelihood -2727.926169, best rearrangement setting 5 Bootstrap[838]: Time 0.242038 seconds, bootstrap likelihood -2645.223304, best rearrangement setting 6 Bootstrap[839]: Time 0.228462 seconds, bootstrap likelihood -2684.154909, best rearrangement setting 12 Bootstrap[840]: Time 0.203814 seconds, bootstrap likelihood -2671.019953, best rearrangement setting 11 Bootstrap[841]: Time 0.235221 seconds, bootstrap likelihood -2689.168869, best rearrangement setting 5 Bootstrap[842]: Time 0.195477 seconds, bootstrap likelihood -2755.358709, best rearrangement setting 5 Bootstrap[843]: Time 0.215075 seconds, bootstrap likelihood -2574.242161, best rearrangement setting 8 Bootstrap[844]: Time 0.209375 seconds, bootstrap likelihood -2739.043280, best rearrangement setting 8 Bootstrap[845]: Time 0.094362 seconds, bootstrap likelihood -2726.600606, best rearrangement setting 12 Bootstrap[846]: Time 0.168749 seconds, bootstrap likelihood -2713.400279, best rearrangement setting 12 Bootstrap[847]: Time 0.177583 seconds, bootstrap likelihood -2777.803437, best rearrangement setting 12 Bootstrap[848]: Time 0.113890 seconds, bootstrap likelihood -2672.231592, best rearrangement setting 8 Bootstrap[849]: Time 0.215446 seconds, bootstrap likelihood -2752.611804, best rearrangement setting 6 Bootstrap[850]: Time 0.141896 seconds, bootstrap likelihood -2669.407771, best rearrangement setting 13 Bootstrap[851]: Time 0.197235 seconds, bootstrap likelihood -2685.037708, best rearrangement setting 15 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[852]: Time 0.213599 seconds, bootstrap likelihood -2781.929028, best rearrangement setting 8 Bootstrap[853]: Time 0.297428 seconds, bootstrap likelihood -2595.850561, best rearrangement setting 8 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[854]: Time 0.228381 seconds, bootstrap likelihood -2760.327477, best rearrangement setting 15 Bootstrap[855]: Time 0.222762 seconds, bootstrap likelihood -2861.604496, best rearrangement setting 14 Bootstrap[856]: Time 0.285669 seconds, bootstrap likelihood -2611.188210, best rearrangement setting 9 Bootstrap[857]: Time 0.215500 seconds, bootstrap likelihood -2532.523526, best rearrangement setting 13 Bootstrap[858]: Time 0.209339 seconds, bootstrap likelihood -2693.374191, best rearrangement setting 14 Bootstrap[859]: Time 0.185651 seconds, bootstrap likelihood -2636.183787, best rearrangement setting 8 Bootstrap[860]: Time 0.205429 seconds, bootstrap likelihood -2659.900283, best rearrangement setting 6 Bootstrap[861]: Time 0.088384 seconds, bootstrap likelihood -2757.561210, best rearrangement setting 13 Bootstrap[862]: Time 0.243269 seconds, bootstrap likelihood -2797.176700, best rearrangement setting 12 Bootstrap[863]: Time 0.157398 seconds, bootstrap likelihood -2632.250762, best rearrangement setting 10 Bootstrap[864]: Time 0.194661 seconds, bootstrap likelihood -2676.013951, best rearrangement setting 12 Bootstrap[865]: Time 0.164245 seconds, bootstrap likelihood -2564.410937, best rearrangement setting 12 Bootstrap[866]: Time 0.086566 seconds, bootstrap likelihood -2531.880861, best rearrangement setting 10 Bootstrap[867]: Time 0.105008 seconds, bootstrap likelihood -2544.232219, best rearrangement setting 5 Bootstrap[868]: Time 0.211936 seconds, bootstrap likelihood -2603.610383, best rearrangement setting 8 Bootstrap[869]: Time 0.180176 seconds, bootstrap likelihood -2647.896180, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[870]: Time 0.212506 seconds, bootstrap likelihood -2658.083401, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[871]: Time 0.279714 seconds, bootstrap likelihood -2596.079060, best rearrangement setting 12 Bootstrap[872]: Time 0.245227 seconds, bootstrap likelihood -2777.838152, best rearrangement setting 15 Bootstrap[873]: Time 0.185599 seconds, bootstrap likelihood -2827.001408, best rearrangement setting 7 Bootstrap[874]: Time 0.081097 seconds, bootstrap likelihood -2706.847361, best rearrangement setting 6 Bootstrap[875]: Time 0.315178 seconds, bootstrap likelihood -2639.133014, best rearrangement setting 15 Bootstrap[876]: Time 0.233972 seconds, bootstrap likelihood -2847.804534, best rearrangement setting 12 Bootstrap[877]: Time 0.184892 seconds, bootstrap likelihood -2623.764811, best rearrangement setting 5 Bootstrap[878]: Time 0.295048 seconds, bootstrap likelihood -2471.992765, best rearrangement setting 10 Bootstrap[879]: Time 0.235562 seconds, bootstrap likelihood -2587.261852, best rearrangement setting 12 Bootstrap[880]: Time 0.087070 seconds, bootstrap likelihood -2655.606652, best rearrangement setting 12 Bootstrap[881]: Time 0.079485 seconds, bootstrap likelihood -2566.333656, best rearrangement setting 13 Bootstrap[882]: Time 0.100480 seconds, bootstrap likelihood -2682.300257, best rearrangement setting 5 Bootstrap[883]: Time 0.271794 seconds, bootstrap likelihood -2647.403142, best rearrangement setting 13 Bootstrap[884]: Time 0.207544 seconds, bootstrap likelihood -2735.435769, best rearrangement setting 14 Bootstrap[885]: Time 0.232088 seconds, bootstrap likelihood -2646.783846, best rearrangement setting 12 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[886]: Time 0.257482 seconds, bootstrap likelihood -2674.286377, best rearrangement setting 15 Bootstrap[887]: Time 0.233525 seconds, bootstrap likelihood -2716.397688, best rearrangement setting 10 Bootstrap[888]: Time 0.085148 seconds, bootstrap likelihood -2665.566755, best rearrangement setting 14 Bootstrap[889]: Time 0.083956 seconds, bootstrap likelihood -2675.918522, best rearrangement setting 15 Bootstrap[890]: Time 0.215720 seconds, bootstrap likelihood -2587.689854, best rearrangement setting 14 Bootstrap[891]: Time 0.260195 seconds, bootstrap likelihood -2688.137604, best rearrangement setting 13 Bootstrap[892]: Time 0.256297 seconds, bootstrap likelihood -2582.602888, best rearrangement setting 11 Bootstrap[893]: Time 0.224344 seconds, bootstrap likelihood -2616.247190, best rearrangement setting 7 Bootstrap[894]: Time 0.172651 seconds, bootstrap likelihood -2571.963902, best rearrangement setting 14 Bootstrap[895]: Time 0.186449 seconds, bootstrap likelihood -2658.659240, best rearrangement setting 12 Bootstrap[896]: Time 0.266821 seconds, bootstrap likelihood -2492.100816, best rearrangement setting 14 Bootstrap[897]: Time 0.206933 seconds, bootstrap likelihood -2580.583519, best rearrangement setting 13 Bootstrap[898]: Time 0.278728 seconds, bootstrap likelihood -2646.082911, best rearrangement setting 9 Bootstrap[899]: Time 0.227909 seconds, bootstrap likelihood -2565.396629, best rearrangement setting 6 Bootstrap[900]: Time 0.178869 seconds, bootstrap likelihood -2644.267685, best rearrangement setting 7 Bootstrap[901]: Time 0.284841 seconds, bootstrap likelihood -2554.879779, best rearrangement setting 7 Bootstrap[902]: Time 0.108776 seconds, bootstrap likelihood -2579.004895, best rearrangement setting 15 Bootstrap[903]: Time 0.143393 seconds, bootstrap likelihood -2757.354716, best rearrangement setting 11 Bootstrap[904]: Time 0.264853 seconds, bootstrap likelihood -2732.383932, best rearrangement setting 13 Bootstrap[905]: Time 0.161166 seconds, bootstrap likelihood -2677.147544, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[906]: Time 0.292814 seconds, bootstrap likelihood -2666.797772, best rearrangement setting 8 Bootstrap[907]: Time 0.194189 seconds, bootstrap likelihood -2578.771552, best rearrangement setting 10 Bootstrap[908]: Time 0.264948 seconds, bootstrap likelihood -2751.282894, best rearrangement setting 15 Bootstrap[909]: Time 0.235685 seconds, bootstrap likelihood -2572.400899, best rearrangement setting 13 Bootstrap[910]: Time 0.076407 seconds, bootstrap likelihood -2613.628732, best rearrangement setting 7 Bootstrap[911]: Time 0.204701 seconds, bootstrap likelihood -2610.485607, best rearrangement setting 15 Bootstrap[912]: Time 0.184868 seconds, bootstrap likelihood -2615.659709, best rearrangement setting 11 Bootstrap[913]: Time 0.095137 seconds, bootstrap likelihood -2652.400674, best rearrangement setting 5 Bootstrap[914]: Time 0.239214 seconds, bootstrap likelihood -2626.048741, best rearrangement setting 11 Bootstrap[915]: Time 0.186379 seconds, bootstrap likelihood -2692.840469, best rearrangement setting 13 Bootstrap[916]: Time 0.200734 seconds, bootstrap likelihood -2564.566196, best rearrangement setting 11 Bootstrap[917]: Time 0.255090 seconds, bootstrap likelihood -2703.000408, best rearrangement setting 13 Bootstrap[918]: Time 0.177077 seconds, bootstrap likelihood -2797.933762, best rearrangement setting 12 Bootstrap[919]: Time 0.100316 seconds, bootstrap likelihood -2624.781183, best rearrangement setting 9 Bootstrap[920]: Time 0.108053 seconds, bootstrap likelihood -2628.200060, best rearrangement setting 14 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[921]: Time 0.160443 seconds, bootstrap likelihood -2516.165055, best rearrangement setting 13 Bootstrap[922]: Time 0.211909 seconds, bootstrap likelihood -2673.019771, best rearrangement setting 7 Bootstrap[923]: Time 0.120558 seconds, bootstrap likelihood -2652.903229, best rearrangement setting 6 Bootstrap[924]: Time 0.248624 seconds, bootstrap likelihood -2671.124819, best rearrangement setting 9 Bootstrap[925]: Time 0.190880 seconds, bootstrap likelihood -2599.099143, best rearrangement setting 7 Bootstrap[926]: Time 0.207502 seconds, bootstrap likelihood -2646.388445, best rearrangement setting 12 Bootstrap[927]: Time 0.178493 seconds, bootstrap likelihood -2611.287675, best rearrangement setting 7 Bootstrap[928]: Time 0.232398 seconds, bootstrap likelihood -2727.714962, best rearrangement setting 14 Bootstrap[929]: Time 0.207551 seconds, bootstrap likelihood -2625.613689, best rearrangement setting 7 Bootstrap[930]: Time 0.092629 seconds, bootstrap likelihood -2720.523320, best rearrangement setting 5 Bootstrap[931]: Time 0.092329 seconds, bootstrap likelihood -2636.835005, best rearrangement setting 7 Bootstrap[932]: Time 0.167022 seconds, bootstrap likelihood -2749.781033, best rearrangement setting 6 Bootstrap[933]: Time 0.176393 seconds, bootstrap likelihood -2796.918861, best rearrangement setting 10 Bootstrap[934]: Time 0.086497 seconds, bootstrap likelihood -2760.342600, best rearrangement setting 13 Bootstrap[935]: Time 0.090570 seconds, bootstrap likelihood -2704.021156, best rearrangement setting 8 Bootstrap[936]: Time 0.091700 seconds, bootstrap likelihood -2789.516556, best rearrangement setting 7 Bootstrap[937]: Time 0.224721 seconds, bootstrap likelihood -2725.464007, best rearrangement setting 8 Bootstrap[938]: Time 0.253249 seconds, bootstrap likelihood -2669.399063, best rearrangement setting 9 Bootstrap[939]: Time 0.175993 seconds, bootstrap likelihood -2672.250715, best rearrangement setting 5 Bootstrap[940]: Time 0.108299 seconds, bootstrap likelihood -2579.088592, best rearrangement setting 15 Bootstrap[941]: Time 0.131172 seconds, bootstrap likelihood -2679.673623, best rearrangement setting 13 Bootstrap[942]: Time 0.164875 seconds, bootstrap likelihood -2679.700768, best rearrangement setting 11 Bootstrap[943]: Time 0.203706 seconds, bootstrap likelihood -2577.613759, best rearrangement setting 11 Bootstrap[944]: Time 0.215212 seconds, bootstrap likelihood -2723.081857, best rearrangement setting 7 Bootstrap[945]: Time 0.251459 seconds, bootstrap likelihood -2656.235577, best rearrangement setting 15 Bootstrap[946]: Time 0.099442 seconds, bootstrap likelihood -2729.400327, best rearrangement setting 9 Bootstrap[947]: Time 0.168765 seconds, bootstrap likelihood -2651.689515, best rearrangement setting 13 Bootstrap[948]: Time 0.207535 seconds, bootstrap likelihood -2621.546920, best rearrangement setting 5 Bootstrap[949]: Time 0.221880 seconds, bootstrap likelihood -2637.139831, best rearrangement setting 6 Bootstrap[950]: Time 0.251816 seconds, bootstrap likelihood -2713.154323, best rearrangement setting 5 Bootstrap[951]: Time 0.223100 seconds, bootstrap likelihood -2678.865491, best rearrangement setting 11 Bootstrap[952]: Time 0.196525 seconds, bootstrap likelihood -2754.283262, best rearrangement setting 8 Bootstrap[953]: Time 0.200739 seconds, bootstrap likelihood -2680.877118, best rearrangement setting 14 Bootstrap[954]: Time 0.174955 seconds, bootstrap likelihood -2690.005915, best rearrangement setting 6 Bootstrap[955]: Time 0.189960 seconds, bootstrap likelihood -2639.704783, best rearrangement setting 11 Bootstrap[956]: Time 0.086024 seconds, bootstrap likelihood -2738.792561, best rearrangement setting 5 Bootstrap[957]: Time 0.212227 seconds, bootstrap likelihood -2650.353700, best rearrangement setting 13 Bootstrap[958]: Time 0.178568 seconds, bootstrap likelihood -2637.083043, best rearrangement setting 8 Bootstrap[959]: Time 0.090158 seconds, bootstrap likelihood -2658.993875, best rearrangement setting 15 Bootstrap[960]: Time 0.117058 seconds, bootstrap likelihood -2727.036481, best rearrangement setting 7 Bootstrap[961]: Time 0.123226 seconds, bootstrap likelihood -2755.183435, best rearrangement setting 6 Bootstrap[962]: Time 0.086017 seconds, bootstrap likelihood -2639.893889, best rearrangement setting 15 Bootstrap[963]: Time 0.172129 seconds, bootstrap likelihood -2576.261879, best rearrangement setting 11 Bootstrap[964]: Time 0.098748 seconds, bootstrap likelihood -2652.044888, best rearrangement setting 9 Bootstrap[965]: Time 0.239022 seconds, bootstrap likelihood -2689.363718, best rearrangement setting 11 Bootstrap[966]: Time 0.207659 seconds, bootstrap likelihood -2686.648782, best rearrangement setting 7 Bootstrap[967]: Time 0.189258 seconds, bootstrap likelihood -2750.803103, best rearrangement setting 13 Bootstrap[968]: Time 0.311074 seconds, bootstrap likelihood -2644.311610, best rearrangement setting 12 Bootstrap[969]: Time 0.146138 seconds, bootstrap likelihood -2598.509307, best rearrangement setting 7 Bootstrap[970]: Time 0.071551 seconds, bootstrap likelihood -2558.265850, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[971]: Time 0.300715 seconds, bootstrap likelihood -2749.240170, best rearrangement setting 13 Bootstrap[972]: Time 0.225331 seconds, bootstrap likelihood -2637.056860, best rearrangement setting 12 Bootstrap[973]: Time 0.170718 seconds, bootstrap likelihood -2665.330577, best rearrangement setting 7 Bootstrap[974]: Time 0.104379 seconds, bootstrap likelihood -2607.626410, best rearrangement setting 10 Bootstrap[975]: Time 0.094446 seconds, bootstrap likelihood -2629.797966, best rearrangement setting 10 Bootstrap[976]: Time 0.103336 seconds, bootstrap likelihood -2785.087351, best rearrangement setting 13 Bootstrap[977]: Time 0.199028 seconds, bootstrap likelihood -2601.191466, best rearrangement setting 12 Bootstrap[978]: Time 0.264523 seconds, bootstrap likelihood -2756.345540, best rearrangement setting 13 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[979]: Time 0.216137 seconds, bootstrap likelihood -2603.328913, best rearrangement setting 9 Bootstrap[980]: Time 0.201914 seconds, bootstrap likelihood -2708.670685, best rearrangement setting 7 Bootstrap[981]: Time 0.170039 seconds, bootstrap likelihood -2794.932226, best rearrangement setting 9 Bootstrap[982]: Time 0.273441 seconds, bootstrap likelihood -2618.240274, best rearrangement setting 8 Bootstrap[983]: Time 0.184627 seconds, bootstrap likelihood -2685.476734, best rearrangement setting 7 Bootstrap[984]: Time 0.094085 seconds, bootstrap likelihood -2590.206418, best rearrangement setting 6 Bootstrap[985]: Time 0.075751 seconds, bootstrap likelihood -2586.623162, best rearrangement setting 14 Bootstrap[986]: Time 0.162610 seconds, bootstrap likelihood -2686.566421, best rearrangement setting 7 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[987]: Time 0.173032 seconds, bootstrap likelihood -2689.634718, best rearrangement setting 11 Bootstrap[988]: Time 0.212385 seconds, bootstrap likelihood -2761.603562, best rearrangement setting 7 Bootstrap[989]: Time 0.126468 seconds, bootstrap likelihood -2603.656402, best rearrangement setting 6 Bootstrap[990]: Time 0.111002 seconds, bootstrap likelihood -2717.712498, best rearrangement setting 8 Bootstrap[991]: Time 0.255398 seconds, bootstrap likelihood -2676.266275, best rearrangement setting 6 Bootstrap[992]: Time 0.241483 seconds, bootstrap likelihood -2597.135391, best rearrangement setting 13 Bootstrap[993]: Time 0.134143 seconds, bootstrap likelihood -2579.073771, best rearrangement setting 13 Bootstrap[994]: Time 0.143002 seconds, bootstrap likelihood -2632.884013, best rearrangement setting 15 Bootstrap[995]: Time 0.203615 seconds, bootstrap likelihood -2687.908520, best rearrangement setting 14 Bootstrap[996]: Time 0.103066 seconds, bootstrap likelihood -2744.073041, best rearrangement setting 10 Bootstrap[997]: Time 0.215700 seconds, bootstrap likelihood -2585.534588, best rearrangement setting 8 Bootstrap[998]: Time 0.203682 seconds, bootstrap likelihood -2589.512803, best rearrangement setting 6 WARNING, outgroups are not monophyletic, using first outgroup "O_dre_DQ98" from the list to root the tree! Bootstrap[999]: Time 0.246349 seconds, bootstrap likelihood -2609.034096, best rearrangement setting 9 Overall Time for 1000 Rapid Bootstraps 185.798364 seconds Average Time per Rapid Bootstrap 0.185798 seconds Starting ML Search ... Fast ML optimization finished Fast ML search Time: 58.190013 seconds Slow ML Search 0 Likelihood: -2677.291345 Slow ML Search 1 Likelihood: -2677.291345 Slow ML Search 2 Likelihood: -2677.291345 Slow ML Search 3 Likelihood: -2677.291345 Slow ML Search 4 Likelihood: -2677.291345 Slow ML Search 5 Likelihood: -2677.291345 Slow ML Search 6 Likelihood: -2677.291345 Slow ML Search 7 Likelihood: -2677.291345 Slow ML Search 8 Likelihood: -2677.291345 Slow ML Search 9 Likelihood: -2677.291345 Slow ML optimization finished Slow ML search Time: 2.737214 seconds Thorough ML search Time: 0.582010 seconds Final ML Optimization Likelihood: -2677.291345 Model Information: Model Parameters of Partition 0, Name: part_1, Type of Data: DNA alpha: 1.474008 Tree-Length: 0.109296 rate A <-> C: 0.485360 rate A <-> G: 1.808646 rate A <-> T: 0.898506 rate C <-> G: 0.295105 rate C <-> T: 5.298640 rate G <-> T: 1.000000 freq pi(A): 0.224144 freq pi(C): 0.277957 freq pi(G): 0.283413 freq pi(T): 0.214486 Model Parameters of Partition 1, Name: part_2, Type of Data: DNA alpha: 0.020013 Tree-Length: 0.109296 rate A <-> C: 0.000017 rate A <-> G: 0.276215 rate A <-> T: 0.000017 rate C <-> G: 0.000017 rate C <-> T: 0.000017 rate G <-> T: 1.000000 freq pi(A): 0.237229 freq pi(C): 0.263158 freq pi(G): 0.295666 freq pi(T): 0.203947 Model Parameters of Partition 2, Name: part_3, Type of Data: DNA alpha: 1.144394 Tree-Length: 0.109296 rate A <-> C: 0.626429 rate A <-> G: 0.653922 rate A <-> T: 2.040408 rate C <-> G: 0.771615 rate C <-> T: 3.009831 rate G <-> T: 1.000000 freq pi(A): 0.171785 freq pi(C): 0.300969 freq pi(G): 0.275334 freq pi(T): 0.251913 Model Parameters of Partition 3, Name: part_4, Type of Data: DNA alpha: 0.020013 Tree-Length: 0.109296 rate A <-> C: 0.335764 rate A <-> G: 1.104402 rate A <-> T: 0.289017 rate C <-> G: 0.651531 rate C <-> T: 0.131590 rate G <-> T: 1.000000 freq pi(A): 0.347453 freq pi(C): 0.169029 freq pi(G): 0.155260 freq pi(T): 0.328258 ML search took 61.538406 secs or 0.017094 hours Combined Bootstrap and ML search took 247.341371 secs or 0.068706 hours Drawing Bootstrap Support Values on best-scoring ML tree ... Found 1 tree in File /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bestTree.Glacuoreseda_ITS_LF.tre Found 1 tree in File /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bestTree.Glacuoreseda_ITS_LF.tre Program execution info written to /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_info.Glacuoreseda_ITS_LF.tre All 1000 bootstrapped trees written to: /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bootstrap.Glacuoreseda_ITS_LF.tre Best-scoring ML tree written to: /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bestTree.Glacuoreseda_ITS_LF.tre Best-scoring ML tree with support values written to: /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bipartitions.Glacuoreseda_ITS_LF.tre Best-scoring ML tree with support values as branch labels written to: /Users/usuario/A_HEDERA/PC/HD_2010/HEDERA/PUBLICACIONES/DOCENTES/FILOGENIAS_UAM_OCW/Documentos WEB/ARCHIVOS DE TRABAJO/MATRICES/PHYLIP/RAxML_bipartitionsBranchLabels.Glacuoreseda_ITS_LF.tre Overall execution time for full ML analysis: 247.398683 secs or 0.068722 hours or 0.002863 days