Log file: aquickie.out Watch is ON Collapsing trees with TBR TNT will find most parsimonious trees for the data set, with 20 independent hits to the best score, and then calculate the strict consensus, calculate supports when requested, and save the results in file "aquickie.out". The consensus tree will be saved to "aquickie.tre" in Nexus format. Time reset Record search status: every 1 rep(s). ------------------------------------------------------------ Search routine used: finding optimal score 20 times independently, using defaults of "xmult" plus 10 cycles of tree-drifting (Goloboff 1999). Note: for consensus calculation, trees TBR-collapsed. ALSO NOTE: THIS IS AN OVERKILL FOR MOST DATA SETS! ------------------------------------------------------------ Space for 1000 trees in memory Repl. Algor. Tree Score Best Score Time Rearrangs. 0 FUSE 5 3832 3832 0:00:00 12,771,619 1 FUSE 5 3832 3832 0:00:01 26,963,050 2 FUSE 5 3832 3832 0:00:02 40,811,988 3 FUSE 5 3832 3832 0:00:03 55,581,794 4 FUSE 5 3832 3832 0:00:03 70,142,480 5 FUSE 5 3832 3832 0:00:04 85,068,756 6 FUSE 5 3832 3832 0:00:05 98,705,775 7 FUSE 5 3832 3832 0:00:06 113,142,881 8 FUSE 5 3832 3832 0:00:06 126,920,771 9 FUSE 5 3832 3832 0:00:07 141,258,891 10 FUSE 5 3832 3832 0:00:08 155,592,319 11 FUSE 5 3832 3832 0:00:08 169,723,736 12 FUSE 5 3832 3832 0:00:09 184,504,364 13 FUSE 5 3832 3832 0:00:10 197,598,887 14 FUSE 5 3832 3832 0:00:11 211,752,594 15 FUSE 5 3832 3832 0:00:11 226,335,483 16 FUSE 5 3832 3832 0:00:12 240,706,704 17 FUSE 5 3832 3832 0:00:13 254,884,989 18 FUSE 5 3832 3832 0:00:14 269,330,235 19 FUSE 5 3832 3832 0:00:14 284,128,458 19 FUSE 5 ------ 3832 0:00:14 284,128,458 Completed search. Total rearrangements examined: 284,128,458. No target score defined. Best score hit 20 times. Best score: 3832. 85 trees retained. Note: for consensus calculation, trees will be temporarily collapsed (with TBR) Strict consensus of 85 trees (0 taxa excluded) calculated, as tree 85 ------------------------------------------------------------ Synapomorphies of 85 trees plotted on the strict consensus. Only unambiguous synapomorphies, occuring in every tree, are indicated. This makes results much more conservative! ------------------------------------------------------------ Collapsing branches with no possible support ("rule 3") Synapomorphies common to 85 trees ÚÄÄ Carica ³ ÚÄÄ6,8,9,19,26,37,40,44,45,62,63,69,72,74,97,100,108,109,110,111,120,123,129,144,145,152,154,186,187,188,193,195,199,201,212,216,233,237,249,269,276,277,278,279,280,283,293,323,412,426,446,450,470,473,476,479,506,508,538,539,560,580,586,588,611,640,641,642,649,652,667,679,683,687,690,694,1363,1480,1505,1506,1507,1508,1509,1510,1511,1512,1513,1514,1515,1529,1557,1569,1614,1650,1722 Moringa ÃÄÄ´ ³ ÚÄÄ4,40,66,68,87,89,90,97,115,119,120,129,131,133,135,142,148,149,150,154,155,159,163,211,220,227,250,275,461,465,493,506,519,577,592,598,599,613,614,616,619,620,622,623,626,629,796,803,898,955,983,995,1060,1072,1078,1105,1110,1112,1117,1118,1119,1120,1121,1123,1124,1125,1127,1128,1130,1132,1170,1174,1184,1218,1311,1323,1325,1331,1332,1333,1337,1361,1362,1363,1393,1400,1401,1402,1404,1405,1406,1408,1409,1605,1635,1636,1637,1638,1639,1640,1643,1665,1701,1712,1734,1737,1746,1747,1748,1754,1755,1756,1757,1758,1759,1760,1761,1762,1763,1764,1765,1766,1767,1768 Arabidopsi ³ ³ ÚÄÄ41,48,50,52,107,114,170,189,197,231,244,246,418,451,452,484,487,488,507,508,565,582,611,644,782,988,1061,1063,1065,1067,1068,1079,1149,1173,1355,1410,1411,1412,1413,1414,1415,1416,1417,1424,1425,1427,1428,1429,1430,1431,1432,1433,1434,1435,1436,1437,1438,1439,1440,1441,1442,1443,1444,1445,1446,1447,1448,1449,1450,1451,1452,1453,1454,1455,1456,1457,1458,1459,1461,1463,1464,1472,1473,1474,1475,1476,1477,1479,1481,1482,1483,1484,1485,1486,1494,1495,1496,1497,1498,1499,1500,1501,1502,1503,1504,1516,1517,1519,1520,1521,1522,1523,1524,1525,1526,1527,1528,1529,1530,1531,1532,1533,1534,1535,1536,1537,1538,1539,1540,1541,1542,1543,1544,1555,1556,1557,1558,1559,1561,1613,1680ÁÄÄ25,37,59,63,85,92,102,108,113,121,123,126,144,157,160,164,177,190,191,199,212,224,233,236,241,256,259,260,261,264,267,268,269,270,271,273,291,316,411,454,470,495,496,499,580,581,584,587,588,632,633,634,635,636,641,652,735,756,757,800,804,867,869,994,1054,1069,1070,1073,1096,1190,1191,1237,1277,1312,1314,1340,1562,1567,1568,1569,1570,1571,1572,1573,1574,1576,1577,1578,1579,1580,1583,1584,1585,1586,1587,1588,1589,1590,1591,1592,1598,1603,1619,1650,1727,1730 Aethionema ÀÄÄ´ ÚÄÄ44,51,54,62,84,85,87,88,97,103,113,115,128,149,150,172,178,254,273,460,474,476,477,478,479,480,493,495,497,503,504,534,537,626,629,641,655,673,680,687,694,695,766,773,816,919,931,932,933,934,935,941,1045,1060,1064,1175,1176,1269,1276,1341,1344,1666,1687,1703´ ÚÄÄ18,47,52,67,90,94,109,114,120,130,135,155,156,190,199,218,246,259,267,293,424,493,497,507,543,648,671,682,691,811,812,813,954,1027,1065,1120,1166,1358,1359,1360,1363,1365,1366,1367,1368,1369,1370,1371,1410,1473,1498,1517,1651,1713 Podandrogy ³ ³ ÀÄÄ11,12,16,21,26,59,61,121,129,145,154,163,222,233,240,242,256,266,281,412,435,436,459,462,473,489,490,491,513,578,598,613,654,665,683,686,696,900,918,965,967,968,969,970,971,972,973,975,979,1032,1033,1034,1036,1040,1043,1051,1053,1071,1146,1324,1330,1426,1491,1492,1493,1639,1659,1661,1681,1691,1692,1693,1694,1695,1696ÁÄÄ5,10,25,29,37,38,41,62,66,69,89,104,110,111,117,124,131,134,138,148,160,172,191,228,234,236,239,251,255,257,260,261,264,280,391,487,519,585,593,594,611,655,657,684,685,689,690,695,723,739,924,935,936,937,938,939,1015,1144,1218,1228,1334,1340,1354,1464,1561,1705,1754,1775 Cleome ³ ³ ÚÄÄ61,65,75,89,98,107,109,115,117,118,124,134,147,152,155,157,158,170,180,199,215,219,223,229,237,244,246,254,276,282,287,315,454,470,471,472,479,488,499,504,506,561,587,611,628,630,641,643,664,683,686,818,905,909,910,911,912,923,1010,1049,1050,1051,1117,1136,1331,1332,1348,1354,1355,1371,1383,1403,1452,1461,1505,1512,1513,1514,1515,1529,1556,1620,1657,1669,1670,1671,1672,1673,1674,1682,1725,1729 Tovaria ÀÄÄ13,17,18,22,23,57,79,89,93,99,105,114,124,126,131,132,134,135,155,158,160,163,175,210,213,261,262,264,270,418,454,466,489,512,532,573,579,590,592,594,599,630,631,648,654,657,659,663,671,675,676,1359,1365,1366,1367,1369,1383,1389,1390,1391,1405,1545,1548,1549,1550,1551,1552,1553,1554,1587,1602,1603,1613,1662,1664,1675,1676,1680,1697,1698,1699,1707,1726´ ³ ÚÄÄ11,60,65,69,71,108,121,147,151,181,187,480,485,609,646,1102,1586 Gyr.the ³ ³ ÚÄÄ7,12,23,38,51,52,61,103,110,111,116,117,128,131,150,153,154,195,210,212,221,222,224,238,256,270,273,276,281,284,291,418,421,460,467,475,477,488,493,494,507,522,542,559,593,610,622,623,626,642,643,684,759,760,761,762,763,764,765,801,803,859,868,872,877,923,1017,1033,1062,1063,1064,1066,1110,1137,1150,1182,1332,1338,1342,1414,1440,1543,1582,1618,1659,1773ÁÄÄ17,89,107,113,124,390,504,506,611,683,886,962,1323,1445,1556 Cod.coti ³ ³ ³ ÚÄÄ14,21,60,62,65,67,68,79,85,86,87,89,90,107,115,124,131,135,148,151,157,159,173,199,208,212,213,218,228,236,246,257,266,272,283,454,466,473,475,476,480,487,499,504,530,532,533,539,540,573,621,642,644,646,647,648,658,664,696,697,776,922,1011,1052,1125,1359,1360,1412,1493,1496,1520,1662,1712,1775 Forchamme ÀÄÄ37,47,50,58,71,72,92,108,138,177,224,266,461,475,484,491,578,632,652,689,790,799,800,801,803,811,812,813,814,815,1052,1053,1054,1055,1056,1075,1076,1324,1456,1746´ ³ ³ ÚÄÄ73,114,482,539 C.hex ³ ³ ³ ÚÄÄ68,69,88,97,119,129,140,141,142,157,163,170,174,230,236,245,251,261,288,471,473,480,483,488,495,540,639,643,648,649,655,908,909,910,911,912,922,1011,1135,1361,1616´ ÚÄÄ1669,1670,1684,1685 C.aby ³ ³ ³ ³ ÀÄÄ199,237,1430ÁÄÄ C.lat ÀÄÄ41,62,69,257,283,473,476,478,497,598,680,880,881,882,883,884,885,886,887,888,1014,1060,1061,1074,1415,1591,1631,1712´ ³ ÚÄÄ76,112,156,161,258,281,467,1360´ ÚÄÄ51,1283,1344,1571 S.int ³ ³ ³ ³ ³ ÚÄÄ S.pros ³ ³ ³ ÀÄÄ65,89,114,122,123,137,138,146,148,149,150,151,152,154,192,217,222,257,262,289,391,412,451,466,496,506,570,581,584,613,614,618,645,680,687,913,955,1017,1124,1152,1180,1181,1323,1357,1408,1414,1473,1564,1575,1576,1577,1578,1579,1580,1581,1583,1584,1585,1586,1608,1612,1614,1617,1618,1650,1700,1701,1702,1703,1737,1745,1777´ ÃÄÄ1562,1650 S.spa ³ ³ ³ ÀÄÄ176,232´ ÚÄÄ660 S.suf ÀÄÄ18,24,37,47,80,82,134,223,225,226,412,489,491,492,495,569,571,575,586,588,590,613,614,627,629,653,657,668,673,674,676,686,804,805,807,808,809,1073,1169,1170,1171,1172,1173,1174,1175,1176,1177,1365,1366,1619´ ³ ÀÄÄÁÄÄ771 S.pur ³ ³ ÚÄÄ30,49,94,148,265,480,485,486,644,889,890,891,892,893,894,895,896,897,928,1560 R.att ³ ³ ÚÄÄ590,1360´ ÚÄÄ108,143,489,645,650 R.val.alm ³ ³ ³ ÀÄÄ156,589´ ÚÄÄ590,735 R.suf ³ ³ ³ ÀÄÄ72,73,122ÁÄÄ143,224,247,250,482,644,1334 R.gay.ale ³ ³ ³ ÚÄÄ224,246,581 R.val.val ³ ³ ÚÄÄ72,152,176,222,466,495,575,645,1643´ ÚÄÄ72,73,156,569,589,662,884,1002,1003,1004,1005ÁÄÄ57,151,229,1586 R.bar ÀÄÄ20,55,57,63,71,72,95,98,125,128,168,169,224,231,254,260,265,288,426,461,471,478,483,485,507,508,510,511,513,514,515,516,518,520,521,522,584,585,587,592,608,638,639,662,666,671,681,687,695,701,742,779,880,900,915,920,921,999,1005,1008,1017,1023,1027,1028,1029,1030,1031,1032,1033,1034,1035,1036,1037,1038,1039,1040,1041,1042,1043,1044,1045,1046,1047,1048,1049,1050,1051,1062,1063,1064,1065,1066,1067,1068,1069,1070,1071,1072,1085,1086,1088,1090,1091,1092,1093,1094,1095,1096,1097,1098,1099,1100,1101,1102,1103,1104,1106,1107,1108,1109,1110,1112,1113,1114,1115,1117,1131,1132,1136,1137,1138,1214,1251,1276,1314,1321,1328,1340,1343,1356,1361,1425,1428,1478,1516,1527,1556,1573,1647,1675,1676,1677,1678,1679,1681,1682,1683,1701,1735,1736´ ³ ³ ÚÄÄ950,951,952,953,954,955,956,957,958,959,960,961,962,963,964,965,966,980,981,982,983,984,985,986,987,988,994,995,996,997,999,1000,1001,1025´ ÚÄÄ139,228,229,481,486,659,1586 R.und.und ³ ³ ³ ³ ÀÄÄ148,480,590,644´ ÚÄÄ132,151,224,265,509,611,1361 R.alb.dec ³ ³ ³ ³ ÀÄÄ94,101,163,294ÁÄÄ57,150,227,643 R.alb.alb ³ ³ ÀÄÄ884,888,898,899,900,901,902,903,904,905,906,907,913,914,915,916,917,918,919,920,921,922,923,924,925,926,927,928,929,930,940,941,942,943,944,945,946,947,948,949´ ÚÄÄ54,82,91,97,118,119,144,148,152,193,222,412,485,535,536,543,569,659,695,773,813,870,952,1129,1137,1354,1700 R.luteo ³ ³ ³ ³ ÚÄÄ56,101,608,1145 O.lin ³ ³ ÀÄÄ132,276,290,481,484,488,559,585,639,686,785,786,787,788,883,1124,1147,1403,1440,1476,1525,1702´ ÚÄÄ103,236,1138,1442´ ÚÄÄ72,1128 O.dip.bur ³ ³ ³ ³ ÀÄÄ115,217,477,1540ÁÄÄ245 O.dre ³ ³ ÀÄÄ23,73,149,154,166,571,575,580,1457,1561,1643´ ÚÄÄ60,94,108,115,116,156,165,259 R.glau ³ ³ ³ ÃÄÄ483,539,776,777,778,779,780,781,782,783,784 R.bat ³ ³ ÀÄÄ24,25,128,640,670,1019,1022,1136´ ÚÄÄ671 R.virg ÀÄÄ120,143,144,154,192,193,464,1530,1532´ ÀÄÄ238ÅÄÄ495,663 R.gre ³ ÀÄÄ1613 R.com ³ ÚÄÄ143,165,241,254,475,482,487,536,569,590,611,637,653,1007,1127,1138,1139,1463,1525,1605,1702 R.ger ³ ³ ÚÄÄ1349,1350,1351,1352,1353 R.vil ³ ³ ÚÄÄ30,57,58,62,68,104,131,187,218,227,233,241,254,280,475,481,487,488,495,581,640,646,651,662,671,690,691,692,693,770,989,990,991,992,993,1165,1639ÁÄÄ77,122,467,637 R.ela ³ ³ ³ ÚÄÄ65,72,79,132,231,235,252,562,608,645,670,678,1137 R.ste ³ ³ ÚÄÄ154,485,639,1556,1597´ ³ ÚÄÄ97,168,190,209,216,222,241,412,467,481,538,539,540,543,560,581,632,638,639,640,650,662,679,681 R.alp ³ ³ ³ ÀÄÄ56,1018´ ³ ÚÄÄ17,209 R.auc.auc ³ ³ ³ ³ ³ ³ ÚÄÄ30,233,247,611,667,955,1159,1160,1161,1162,1567 R.auc.afg ³ ³ ³ ÀÄÄ137,212,262,569,637´ ÃÄÄ683ÁÄÄ19,643,1414,1727 R.mur.pat ³ ³ ³ ³ ³ ÚÄÄ1018,1145 R.gil.gil ÀÄÄ115,151,163,179,180,236,639,662,1322,1700´ ³ ³ ÃÄÄ56,212,257,580ÅÄÄ1344 R.oli ³ ³ ÀÄÄ62,67,68,70,71,88,254,494,1018´ ÀÄÄ480,682 R.ell ³ ³ ³ ÚÄÄ560,586 R.gil.bra ³ ³ ³ ÃÄÄ42,115,118,132,264,475,573,1025 R.sphe ³ ³ ³ ÃÄÄ57,209,231,256,261,284,481,482,543,659,672,678,683,1316,1499,1650 R.mic ³ ³ ÀÄÄ667ÅÄÄ96,155,238,464,610,637,981,1472,1639 R.buh ³ ³ ³ ÚÄÄ240,467,493,660,690,1581 R.viri ³ ³ ³ ³ ÚÄÄ129,130,131,132,133,657 R.amb.som ³ ³ ÀÄÄÅÄÄ147,241ÁÄÄ587 R.mig ÀÄÄ99,168´ ³ ÚÄÄ870 R.amb.ade ³ ÀÄÄ245ÅÄÄ100 R.ses ³ ÀÄÄ1137,1138,1650 R.tel ³ ÚÄÄ24,25,42,52,56,65,72,73,94,98,102,113,117,123,138,148,280,289,391,463,480,495,567,653,670,677,681,683,877,922,923,1137,1360,1427,1561,1571,1597,1599,1622,1623,1624,1625,1626,1627,1628,1629 R.sco ³ ³ ÚÄÄ38,82,92,106,109,127,129,130,131,132,134,136,137,138,474,552,562,880,881,882,883,884,885,886,887,888,1450 Ran.afr ³ ³ ÚÄÄ104,113,149,151,170,252,493,644,658,942,1018,1138,1428´ ÚÄÄ44,52,53,69,133,171,235,262,481,539,585,662,914,1237,1612 Oc.och ³ ÚÄÄ159´ ³ ÀÄÄ73,233,639,1360,1622,1623,1624,1625,1626,1627,1628,1629´ ÚÄÄ65,98,107,222,261,569,591,618,691,692,693 Oc.auc ³ ³ ³ ³ ÀÄÄ1139,1140´ ÚÄÄ57,63,123,467,732,1141,1142,1245,1312,1360 Oc.ara ³ ³ ³ ³ ÀÄÄ132,582,585,942,1118´ ÚÄÄ291,568,582,586,646,1140 Oc.ran ³ ³ ÀÄÄ67,68,70,71,165´ ÀÄÄ940,1436ÁÄÄ471 Oc.bac ³ ³ ³ ÚÄÄ74,190,921,1523 R.lut.lut ³ ³ ³ ÚÄÄ100,101,166,257,286,480,539,779,880,881,882,883,884,885,886,887,888,1005,1434,1753´ ÚÄÄ R.lut.neg ³ ³ ³ ³ ÀÄÄ92,288,568,996,1137ÁÄÄ1603 R.cry ÀÄÄ43,471,488´ ÀÄÄ24,97,103,254,485,637,642´ ÚÄÄ47,66,72,109,132,210,222,230,283,465,587,1137 R.str ³ ÀÄÄ79,758,955,1740,1744´ ÚÄÄ61,95,234,468,469,541,902,1017,1465,1466,1467,1468,1469,1470,1471 R.lan.con ³ ÀÄÄ43,80,92,480,646,662´ ÚÄÄ495,531,1138,1139,1140,1141,1287,1288,1462,1523,1562,1650 R.dur ³ ÀÄÄ4,60,166,225,229,574,594,1014,1249,1344,1497ÁÄÄ109,115,147,646,678,1137,1588 R.urn ³ ÚÄÄ110,133,146,153,166,229,262,264,596,645,696,837,987,1005,1251,1436,1523 R.steno ³ ³ ÚÄÄ73,94,480,646,785,786,787,788,789,1589 R.med.ori ³ ÃÄÄ14,77,97,109,235,473,540,679,681,683,845,898,899,900,901,902,903,904,905,906,907,913,914,915,916,917,918,919,920,921,922,924,925,926,927,928,929,1025,1136,1137,1361,1367ÁÄÄ22,650,1366,1418,1419,1420,1421,1422,1423 R.med ÀÄÄ201,203,205,208,236,671,1518´ ÚÄÄ267,796,942,1152,1427,1457,1580,1650 R.jac ³ ³ ÚÄÄ113,484,628,674,1599 R.phy.rup ³ ³ ÚÄÄ1025,1605ÁÄÄ116,1005,1587 R.phy ÀÄÄ64,231,481,568,639,640,662´ ³ ÚÄÄ42,92,235,647,784,987 R.alo ³ ³ ÃÄÄ1190 R.ara ÀÄÄ785,786,787,788,789,1361´ ÃÄÄ61,63,64,82,484,505,1650 R.col ³ ÃÄÄ16,18,25,55,113,148,227,232,247,254,257,464,486,678 R.dif ³ ³ ÚÄÄ24,25,144,1559,1599 R.odo ÀÄÄ43,169,582,1645ÅÄÄ1137,1165,1332,1346,1347,1348,1354,1355,1356,1357,1358,1359,1360,1361,1362,1363,1364,1365,1393,1394,1395,1396,1397,1398,1399,1400,1401,1402,1403,1404,1405,1406,1407,1408,1409,1410,1411,1412,1413,1414,1415,1416,1417,1424,1425,1427,1428,1429,1430,1431,1432,1433,1434,1435,1436,1437,1438,1439,1440,1441,1442,1443,1444,1445,1446,1447,1448,1449,1543ÁÄÄ30,37,52,111,145,148,190,233,238,261,264,315,510,626,631,672,1025,1459 R.spnov ³ ÚÄÄ82,190,227,467,582,1138,1143,1354 R.arm ÃÄÄ644,1476ÁÄÄ1137 R.tym.ana ³ ÚÄÄ52,94,1157,1451,1473,1476 R.tym.tym ÀÄÄ657,687ÁÄÄ30,699 R.ino Closing tree metafile (1 tree diagrams saved) Collapsing trees with TBR Selecting tree(s) 85, 1 trees selected ------------------------------------------------------------ Group supports are calculated by TBR-swapping the trees found, keeping note of the number of steps needed to loose each group. The labels on branches show absolute and relative bremer supports (Goloboff & Farris 2001). Groups indicated with a question mark (?) are those for which the absolute bremer supports appear to be 10 or more... ------------------------------------------------------------ Suboptimal 10.000 x 0.000 Can't open Y:\A_HEDERA\PC\HD_2010\HEDERA\PUBLICACIONES\DOCENTES\In press_FILOGENIAS_UAM_OCW\Documentos WEB\FINAL\3_MaterialDeClase\Tema 3\Tema 3.3\7_Outputs 3.3\tmp.tre Error reading line 232 of Y:\A_HEDERA\PC\HD_2010\HEDERA\PUBLICACIONES\DOCENTES\In press_FILOGENIAS_UAM_OCW\Documentos WEB\FINAL\3_MaterialDeClase\Tema 3\Tema 3.3\7_Outputs 3.3\aquickie.run tag= ; p tmp.tre ; bsupp !!+0 1. ^ Auto-collapse searches is OFF Copied legends: "GC values, 1000 replicates, cut=1 (tree 0) - Standard Bootstrap" Average group support: 23.0 499.80 secs. to complete resampling Auto-collapse searches is OFF Copied legends: "GC values, 100 replicates, cut=50 (tree 0) - Standard Bootstrap" Average group support: 20.1 48.81 secs. to complete resampling